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    Karel Mácha
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    Amino acid side chain parameters for correlation studies in biology and pharmacology rapid generation of mutation data matrices from protein sequences.

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    Amino acid side chain parameters for correlation studies in biology and pharmacology rapid generation of mutation data matrices from protein sequences.

    Copyright:

    Attribution Non-Commercial (BY-NC)
    Download as PDF, TXT or read online from Scribd
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    5 views1 page

    Results1 Main

    Uploaded by

    Karel Mácha
    Amino acid side chain parameters for correlation studies in biology and pharmacology rapid generation of mutation data matrices from protein sequences.

    Copyright:

    Attribution Non-Commercial (BY-NC)
    Download as PDF, TXT or read online from Scribd
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    of 1

    Table 1: Results nr.

    1 main data
    Accesion number Data description Amino acid index data ...
    Ala Arg Asn Asp Cys Gln Glu Gly His Ile Leu Lys Met Phe Pro Ser Thr Trp Tyr Val ...
    FASG760105 pK-C (Fasman, 1976) 2,34 1,82 2,02 1,88 1,92 2,17 2,1 2,35 1,82 2,36 2,36 2,16 2,28 2,16 1,95 2,19 2,09 2,43 2,2 2,32 ...
    FAUJ880113 pK-a(RCOOH) (Fauchere et al., 1988) 4,76 4,3 3,64 5,69 3,67 4,54 5,48 3,77 2,84 4,81 4,79 4,27 4,25 4,31 0 3,83 3,87 4,75 4,3 4,86 ...
    JOND920102 Relative mutability (Jones et al., 1992) 100 83 104 86 44 84 77 50 91 103 54 72 93 51 58 117 107 25 50 98 ...
    LEVM760105 Radius of gyration of side chain (Levitt, 1976) 0,77 2,38 1,45 1,43 1,22 1,75 1,77 0,58 1,78 1,56 1,54 2,08 1,8 1,9 1,25 1,08 1,24 2,21 2,13 1,29 ...
    ZIMJ680102 Bulkiness (Zimmerman et al., 1968) 11,5 14,28 12,82 11,68 13,46 14,45 13,57 3,4 13,69 21,4 21,4 15,71 16,25 19,8 17,43 9,47 15,77 21,67 18,03 21,57 ...

    binary Amino acid index data Author(s) ...


    Ala Arg Asn Asp Cys Gln Glu Gly His Ile Leu Lys Met Phe Pro Ser Thr Trp Tyr Val ...
    0 1 1 1 1 0 1 0 1 0 0 1 0 1 1 0 1 0 0 0 Fasman, G.D., ed. ...

    1
    0 1 1 0 1 0 0 1 1 0 0 1 1 0 1 1 1 0 1 0 Fauchere, J.L., Charton, M., Kier, L.B., Verloop, A. and Pliska, V. ...
    0 1 0 0 1 0 1 1 0 0 1 1 0 1 1 0 0 1 1 0 Jones, D.T., Taylor, W.R. and Thornton, J.M. ...
    1 0 1 1 1 0 0 1 0 0 1 0 0 0 1 1 1 0 0 1 Levitt, M. ...
    1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 1 0 0 0 0 Zimmerman, J.M., Eliezer, N. and Simha, R. ...

    Title of the article Journal reference

    Handbook of Biochemistry and Molecular Biology, 3rd ed., Proteins - Volume 1, CRC Press, Cleveland (1976)
    Amino acid side chain parameters for correlation studies in biology and pharmacology Int. J. Peptide Protein Res. 32, 269-278 (1988) (Pro missing)
    The rapid generation of mutation data matrices from protein sequences CABIOS 8, 275-282 (1992)
    A simplied representation of protein conformations for rapid simulation of protein folng J. Mol. Biol. 104, 59-107 (1976) (Gly 0.089)
    The characterization of amino acid sequences in proteins by statistical methods J. Theor. Biol. 21, 170-201 (1968)

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