Professional Documents
Culture Documents
Assay Specifications
Limit of Detection Limit of Quantitation Linear Dynamic Range Assay CV Compatible Sample Types Assay Format Targets/well 2,000 transcripts/assay well 5,000 transcripts/assay well 3 logs 15% intra-assay; 20% inter-assay Cultured cells, whole blood, PAXgene blood or dried blood spots, fresh/frozen tissues, FFPE samples, purified RNA 96-well plate 330
2.0 Pre-Ampli er
Dried Blood Spots Whole Blood or PAXgene Blood FFPE Sections Animal Tissues Cultured Cells
LE mRNA CE CP Capture Bead
BL a)
b)
Step 4: Detection
The sample is analyzed on a Luminex* instrument. The level of SAPE uorescence is proportional to the amount of mRNA transcripts captured by the bead.
* Bio-Plex suspension array system or other Luminex-based array systems.
Assay Highlights
Quantitatively measure multiple RNA targets simultaneously with unparalleled accuracy and precision RNA quantitation directly from cultured cells, whole blood, or fresh, frozen or formalin-fixed, paraffinembedded (FFPE) tissue No RNA purification No reverse transcription No target amplification
10000
1000 100 10 1
Cytokine RNAs
0.1 0.1
10
100
1000
10000
Housekeeping RNAs
QuantiGene Plex
Values in the graph demonstrate the expected induction of 4 cytokine RNAs in 10 L of whole blood samples treated with LPS. No significant changes were detected in the expression of 8 housekeeping RNAs. Data from QuantiGene Plex 1.0 and QuantiGene Plex 2.0 assays had a correlation coefficient of 0.9995.
Fold-change (+PMA/-PMA)
50 40 30 20 10 0 GAPDH
Housekeeping RNAs
Target
Values in the graph demonstrate the expected induction of IL-8 in FFPE preparations of HeLa cell pellets treated with PMA. No significant changes were detected in the expression of 10 housekeeping RNAs. Data from the QuantiGene Plex 1.0 and QuantiGene Plex 2.0 assays had a correlation coefficient of 0.9999.
Widely used in biomarker validation, microarray validation, predictive toxicology and secondary screening
RPLP0
PGK1
HPRT1
PPIB
POLR2A
RPL19
RPL32
RPS20
RPS3
IL-8
How It Works
Our novel, Procarta TF assay allows for the profiling of multiple TFs from a variety of sample types including cell lysates and nuclear extracts. Up to 40 TFs can be analyzed in one well.
Step 1: Incubation of the cis element probes with the nuclear extract or whole cell lysate in 96 well plate
TFn TF1
TF2
Cis1
Step 2: Transfer probe TF mixture to separation plate and wash TF bound probe mix. Denature cis elements away from TFs
TFn TF1
Cis1
TF2
Cis2
Key Applications
Profile the activities of multiple TFs upon a given drug stimulus Monitor off-target effects upon a given drug treatment Confirm cell signaling pathways using the TF Plex Assay
Step 3: Denature cis elements by heat and aneal to Luminex beads with anti-sense sequence
Cis1
Cisn Cis2
Cis1
Cisn
Cis2
Cis1
bead 1
Cis2
bead 2
Cisn
bead 3
MFI
1 2 3
1 2 3
1 2 3
1 2 3
AP-1
NF-1
NF-E2
STAT4
ETS/PEA MYOD
NF-E1/YY1 SMAD
NEUROD1 TFE-3
Measure Protein and Gene Expression from the Same Sample Well
Panomics Procarta Cytokine Assay Kits enable the profiling of up to 33 (check website for an updated list) different cytokines per reaction. When coupled with Panomics QuantiGene Plex assays, both gene and protein expression can be
How It Works
IL-10
35,000 Median Fluorescence Intensity (MFI) 30,000 25,000 20,000 15,000 10,000 5,000 0 1 10 100 1,000 10,000 100,000 IL-1alpha IL-2 IL-4 IL-6 IL-12 (p40) IL-13 GM-CSF EOTAXIN RANTES IFNgamma Analyte (pg/ml) IL-1beta IL-3 IL-5 IL-10 IL-12 (p70) IL-17 MIP-1alpha KC TNFalpha
Assay Highlights
Mix and match to create your own plex set from Human, Mouse and Rat analytes from the list below Complete assay in less than 3 hours Reagents are supplied at 1X concentration and ready to use Quantitative measurements from cell culture supernatants, serum or plasma samples Minimal sample required, only 25 L
Standard Curves were generated in cell culture media using Panomics 19-plex Procarta Mouse Cytokine Assay Kit. Each analyte has a sensitivity of 10 pg/mL or less and an assay range over 3 logs.
35,000 30,000 mRNA Expression (MFI) 25,000 20,000 15,000 10,000 5,000 0 0 20 30 60 120 240 480 960 1440 2880 Minutes Protein IL-8 mRNA IL-8
4000 3500 Protein Expression (MFI) 3000 2500 2000 1500 1000 500 0
800 700 mRNA Expression (MFI) 600 500 400 300 200 100
0
350
Protein IL-1 mRNA IL-1
20
30
60
120 Minutes
240
480
960
1440
2880
Simultaneous analysis of protein and gene expression from the same sample. Human histocytic lymphoma cells, U-937, were treated with 1 g/mL of LPS. At various timepoints, cells culture supernatants samples were collected and the corresponding cells were lysed. The supernatants were analyzed for 20 different cytokines using Procarta Human Cytokine Assay. The cell lysates were analyzed for 30 different cytokines using QuantiGene Plex Reagent System. The results of protein and gene analysis of two cytokines, IL-8 and IL-1, are shown above.
Human 33
L-1-alpha L-1-beta IL-2 IL-4 IL-5 IL-6 IL-7 IL-8 IL-10 IL-12(p70) IL-12(p40) IL-13 IL-17 ENA-78 EOTAXIN FGF-basic G-CSF GM-CSF GRO-alpha iIFN-gamma IP-10 LEPTIN MCP-1 MCP-3 MIG MIP-1-alpha MIP-2-alpha NGF PDGF-BB RANTES TGF-beta TNF-alpha VEGF
Mouse 23
L-1-alpha IL-1-beta IL-2 IL-3 IL-4 IL-5 IL-6 IL-10 IL-12(p40) IL-12(p70) IL-13 IL-17 IP-10 EOTAXIN GM-CSF IFN-gamma KC MCP-1 MCP-3 MIP-1-alpha RANTES TNF-alpha VEGF
Rat 9
IL-1-alpha IL-1-beta IL-6 I-CAM KC MCP-1 MIP-1-alpha TNF-alpha VCAM
Specifications
Sensitivity Precision 1 pg/mL/cytokine Average Inter-assay CV <10% Average Intra-assay CV <10% 80-120% Negligible Cell culture supernatants, serum, plasma
SH2PLCY
SH2P13K
SH2GRB2
SH2Abl
P P P
SH2GRB2
P P
SH2P13K
SH2GRB2
SH2Abl
The Procarta SH2 Domain Plex assay is a 30 plex assay capable of profiling identifying differences of measuring SH2 proteins that have bound to phosphorylated tyrosine residues of proteins.
The speci c SH2 protein binds to the phosphorylated receptor and initiates the cell signaling cascades
2000.0 1800.0 1600.0 1400.0 1200.0 1000.0 800.0 600.0 400.0 200.0 0.0 3BP2 (7) ABL2 (12) BTK (18) CRK (20) CRKL (21) DAPP1 (25) FYN (26) CSK (29) VAV3 (32)
LCK (34)
LCP2 (35)
MATK (36)
NSP1 (37)
P55G-D1 (41)
P85A-D1 (42)
P85A-D2 (43)
P85B-D1 (44)
P85B-D2 (45)
PLCG1-D1 (46)
PTPN11-D2 (47)
PTPN6-D2 (51)
STAP2 (53)
SYK-D2 (54)
TNS (55)
SOCS2 (52)
GRAP (19)
GRB10 (27)
GRB14 (28)
SHC1 (56)
GrB2 (38)
How It Works
bead 1 ABL2 bead 2 CRK bead 3 LCK bead n GRB10
Panomics provides Luminex beads conjugated to SH2 proteins.
Assay Highlights
Mix and match to create your own plex set Complete assay in less than 4 hours Reagents are supplied at 1X concentration and ready to use
Treated and untreated cell lysates are prepared containing phosphorylated tyrosine kinases.
P P P
P P P
P P P
P P P
Key Applications
SH2 Profiling Peptide affinity screening Drug binding screening
P P P
P P P
bead 3 LCK
bead 1 ABL2
SH2 conjugated beads are added to the cell lysates and only the specific SH2 bead will bind to the phosphorylated receptor tyrosine kinases (RTKs).
P P P
P P P
bead 2 CRK
3BP2 ABL2 BTK GRAP CRK CRKL DAPP1 FYN GRB10 GRB14
CSK VAV3 LCK LCP2 MATK NSP1 GRB2 P55G-D1 P85A-D1 P85A-D2
P85B-D1 P85B-D2 PLCG1-D1 PTPN11-D2 PTPN6-D2 SOCS2 STAP2 SYK-D2 TNS SHC1
bead 1 ABL2
P P P
P P P B S-PE Streptavidin-PE
Anti-phosphotyrosine antibody is added, followed by the addition of the Streptavidin PE. The complex is then analyzed on the Luminex System. The beads that do not have any bound RTKs will have little or no fluorescence.
xMAP Technology
The xMAP technology uses 5.6 micron polystyrene microspheres which are internally dyed with red and infrared fluorophores. Using different amounts of the two dyes for different batches of microspheres, up to 100 different microsphere sets can be created. Each bead is unique with a spectral signature determined by its red/ infrared dye mixture. The bead is filled with a specific known ratio of the two dyes. As each microsphere carries a unique signature, the xMAP detection system can identify to which set it belongs. Therefore, multiplexing up to 100 tests in a single reaction volume is possible.
5.6 Microns Bead Set 26 Bead Set 21 The bead is impregnated with the dye mixture
iqu
e In
fra
red
Dy eC on
cen t
rat io
ns
10
Un
iqu
D Red
ye
Co
tr cen
atio
ns
FluidicsThe reader detects individual beads by flow cytometry. The fluidics system of the reader aligns the beads into single file as they enter a stream of sheath fluid and then enter a flow cell. Once the beads are in single file within the flow cell, each bead is individually interrogated for bead color (analyte) and assay signal strength (PE fluorescence intensity)
LasersThe reader uses a 532 nm green laser (assay laser) is used to excite the PE dye of the assay (Streptavidin-PE). The 635 nm solid state laser (red classify laser) is used to excite the dyes inside the beads to determine their color or region and is also used for doublet discrimination by light scatter DetectorsThe reader has four detectors, one for each of the optical paths shown in the figure below. Detectors are used to measure the fluorescence of the assay, to make bead determination (1-100) and the last to discriminate between single and aggregate beads.
De say As
53 Gree 2 nm n Las er
tor tec
Bead
Dete
ctor 2
DD
te De
cto
Bead
Dete
ctor 1
For pricing and more information visit our website at www.panomics.com or call us at 1.877.726.6642. We also offer custom services. Contact us for details.
6519 Dumbarton Circle Fremont, CA 94555 Toll Free: 1.877 PANOMICS (1.877.726.6642) T: 510.818.2600 F: 510.818.2610 www.panomics.com
U.S. Corporate Headquarters Panomics, Inc. 6519 Dumbarton Circle Fremont, CA 94555 Toll Free: 877 PANOMICS (1.877.726.6642) Direct: 1.510.818.2600 Fax: 1.510.818.2610 Email: info@panomics.com Email: orders@panomics.com Email: techsupport@panomics.com
European Headquarters Panomics Srl Via Sardegna 1 20060 Vignate-Milano (Italy) Tel: +39.02.95.360.250 Fax: +39.02.95.360.992 Email: info_europe@panomics.com Email: order_europe@panomics.com Email: techsupport_europe@panomics.com
www.panomics.com
2007 Panomics, Inc. All rights reserved. Panomics is a trademark of Panomics, Inc. Procarta is a registered trademark of Panomics, Inc. QuantiGene an is a registered trademark exclusively licensed to Panomics, Inc. xMAP and Luminex are registered trademarks of Luminex Corporation. All other trademarks belong to their respective owners. Part #14940