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ORIGINAL ARTICLE
Keywords Abstract
biostimulation, carvone, cumene,
groundwater, plant terpenes, secondary plant Aims: To examine plant terpenoids as inducers of TCE (trichloroethylene) bio-
metabolites, TCE. transformation by an indigenous microbial community originating from a
plume of TCE-contaminated groundwater.
Correspondence Methods and Results: One-litre microcosms of groundwater were spiked with
Andrew C. Singer, Centre for Ecology and
100 lmol 1)1 of TCE and amended weekly for 16 weeks with 20 ll 1)1 of the
Hydrology, Maclean Building, Benson Lane,
Crowmarsh Gifford, Wallingford OX10 8BB,
following plant monoterpenes: linalool, pulegone, R-(+) carvone, S-()) carv-
UK. E-mail: acsi@ceh.ac.uk one, farnesol, cumene. Yeast extract-amended and unamended control treat-
ments were also prepared. The addition of R-carvone and S-carvone, linalool
2009 ⁄ 1000: received 5 June 2009, revised and cumene resulted in the biotransformation of upwards of 88% of the TCE,
and accepted 9 September 2009 significantly more than the unamendment control (61%). The aforementioned
group of terpenes also significantly (P < 0Æ05) allowed more TCE to be
doi:10.1111/j.1472-765X.2009.02738.x
degraded than the remaining two terpenes (farnesol and pulegone), and the
yeast extract treatment which biotransformed 74–75% of the TCE. The micro-
bial community profile was monitored by denaturing gradient gel electrophore-
sis and demonstrated much greater similarities between the microbial
communities in terpene-amended treatments than in the yeast extract or una-
mended controls.
Conclusions: TCE biotransformation can be significantly enhanced through the
addition of selected plant terpenoids.
Significance and Impact of the Study: Plant terpenoid and nutrient supplemen-
tation to groundwater might provide an environmentally benign means of
enhancing the rate of in situ TCE bioremediation.
it would be beneficial to seek alternative substrates that a TCE-contaminated site located in southern England.
would stimulate TCE-degradation without causing addi- The site covers an area of c. 3 km2 and is characterized
tional environmental concern. by a shallow chalk aquifer, protected by London clay
A novel avenue for selecting suitable cometabolites is the overlain by Silchester Gravels of Eocene age. The ground-
use of plant secondary metabolites. Plant secondary metab- water contains a plume of TCE at a concentration
olites are low molecular weight plant products (Hadacek between 5 and 620 lmol l)1. A total of 27 boreholes rep-
2002) that are traditionally considered to be nonessential resentative of the plume were sampled against a hydraulic
for the basic metabolic processes of the plant (Dixon 2001). gradient within an area of 25 000 m2. The boreholes used
Terpenes are the main components of essential oils of in this study contained TCE at a moderate to high level
plants, such as limonene from lemon oil, carvone from (150–400 lmol l)1). Groundwater samples located outside
spearmint oil and pinene from pine oil. A wide range of of the plume served as a control.
terpenes have already been reported to stimulate microbial
degradation of xenobiotic compounds, such as polychlori-
Microcosm preparation
nated biphenyls (PCB) (Gilbert and Crowley 1997; Singer
et al. 2000, 2003; Crowley et al. 2001; Oh et al. 2003). The Microcosms were prepared in the 1000-ml sampling bot-
monoterpene cumene has previously been demonstrated to tle by sparging with nitrogen to remove the ‘native’ TCE
stimulate TCE degradation in pure culture (Dabrock et al. and any additional co-contaminating volatile organics. All
1992; Suttinun et al. 2004) and in soil (Suttinun et al. microcosms were spiked with an initial concentration of
2004). Hence, we hypothesized that an even wider range of 100 lmol l)1 of TCE. Each bottle was amended with
plant secondary metabolites should be applicable to 20 ll l)1 of substrate: linalool, pulegone, cumene, farne-
enhancing TCE biodegradation owing to many structural sol, R-(+) carvone, and S-()) carvone. The concentration
similarities within the terpenoids. of 20 ll l)1 was chosen as it was below the concentration
In this study, we constructed one-litre microcosms to of the least soluble of the terpenoids; hence, it was
compare TCE biotransformation by the indigenous assumed that all microcosms had equivalent exposure to
microbial community from a TCE-contaminated ground- each of the treatment compounds. Control microcosms
water plume. Groundwater amended with TCE were set up with no substrate and a sterilize blank which
(100 lmol l)1) was spiked with one of six plant second- was autoclaved at 121C, 15 psi, for 15 min. A micro-
ary metabolites: 1, 6-octadien-3-ol (linalool), R-(+)- cosm was also set up with 20 mg l)1 of yeast extract as a
p-menth-4 (8)-en-3-one (pulegone), 2-cyclohexen-1-one terpene-free carbon source control. The nine microcosm
[R-(+) carvone], 2-cyclohexen-1-one [S-()) carvone], treatments were set up in triplicate. Microcosms were
2,6,10-dodecatrien-1-ol, 3,7,11-trimethyl (farnesol) and kept at 22C in the dark with weekly addition of the
isopropylbenzene (cumene), with one treatment receiving respective substrate (20 ll l)1). A small headspace volume
only yeast extract and the control remaining unamended. (c. 10 ml) was maintained in the bottles to minimize par-
TCE biotransformation was confirmed by headspace anal- titioning of TCE between the liquid and gas phase.
ysis-gas chromatography. The microbial communities Hence, microaerophilic and anaerobic conditions likely
were monitored by denaturing gradient gel electrophoresis persisted in the microcosms during the majority of the
(DGGE; community structure). study except directly following the respiking of the meso-
cosms each week, at which point each microcosm was
vigorously shaken providing limited aeration. Samples
Materials and methods
were withdrawn using a glass pipette directly after the
bottles had been shaken and placed directly into a 20-ml
Materials
borosilicate gas chromatograph-headspace vial and fitted
TCE (99% purity) and S-()) carvone (98% purity), cum- with a PTFE-lined septum crimp cap.
ene (99% purity), linalool (98% purity) were obtained
from Sigma Aldrich (York, UK), R-(+) carvone (98%
Analytical methods
purity) from Lancaster (Morecambe, UK) and both pule-
gone (92% purity) and farnesol (96% purity) from Arcos Samples (5 ml) were amended with 50 ll of 5 mol l)1
Organics (Leicestershire, UK). NaOH to terminate biological activity and 2-ll dibromo-
benzene as an internal standard. The vial was placed in a
headspace sampler (Agilent 7964; Agilent Technologies,
Field site
Berkshire, UK) in shake mode, with an oven temperature
Samples were collected in 1000-ml PTFE-lined screw- of 70C, loop temperature of 110C and a transfer line
capped glass bottles with no headspace from boreholes of temperature of 90C to the gas chromatograph inlet. A
75-m · 0Æ53-mm DB-624 capillary column with a 3-lm programme was as follows: 95C denaturation for 2 min
film (Agilent Technologies) was used to separate TCE. followed by 35 cycles at 95C for 60 s, annealing at 60C
The temperature programme of the Agilent 6890 gas for 60 s, 72C extension for 90 s and a single step of
chromatograph (Agilent Technologies) used was as fol- 72C for 30 min. DGGE was performed with the Bio-Rad
lows: 50C hold for 4 min, 40–280C for 5 min, hold for D Code system (Bio-Rad, Hercules, CA, USA). The PCR
6 min at 300C. The electron capture detector (ECD) product was loaded onto a 10% (w ⁄ v) acrylamide gel
operated at a temperature of 300C; helium was the car- containing a linear denaturant gradient of 30–60% [100%
rier gas with a flow rate of 1Æ0 ml min)1. The makeup gas denaturant consisted of 7 mol l)1 urea and 40% (v ⁄ v)
was nitrogen at 60 ml min)1. The data were recorded formamide parallel to the direction of electrophoresis].
using the ChemStation Software Rev A.10.02 (Agilent Gels were run in a 0Æ5· TAE buffer at 60C and 100 V
Technologies). Calibration curves were prepared from for 16 h. Gels were stained with 0Æ5· TAE buffer contain-
serial dilution of TCE in methanol. ing SyberGold (Molecular Probes, Paisley, UK) and pho-
Samples (1 ml) were removed from each microcosm tographed using the VersaDOC Imaging System and the
weekly for 16 weeks and analysed for chloride (Chen Quantity One software (Bio-Rad). Band and profile anal-
et al. 2005) using ion chromatography on a Dionex AS50 ysis were determined using Phoretix 1D analysis soft-
(Dionex Corporation, Leeds, UK), employing an isocratic ware (Phoretix International, Newcastle upon Tyne, UK).
pump, an Ionpac ASH-HC column autosampler and elec-
trochemical detector. Results were corrected for back-
Statistical analysis
ground chloride.
One-way anova with Tukey HSD (honestly significant
difference) was performed by using spss 16.0 (SPSS Inc.,
Molecular biological investigations
Chicago, IL). The correlation coefficient r is only stated if
Total nucleic acids from the indigenous microbial com- their significance level was at least 95% (P < 0Æ05). For
munity were extracted from 50 ml of groundwater sam- the analysis of the relationship between DGGE profiles
ples by a combination of bead beating, enzymatic lysis agglomerative hierarchical clustering was performed by
and solvent extraction for DGGE analysis, as previously the unweighted-pair group method using arithmetic aver-
described (Griffiths et al. 2000). A 200-bp product span- ages (UPGMA) with squared Euclidean distances which
ning the V3 region of the 16S rDNA was amplified by was displayed as a dendrogram.
PCR as previously described (Muyzer et al. 1993), in a
total volume of 50 ll containing universal 16S primers
Results
530r (5¢-GTA TTA CCG CGG CTG CTG-3¢) and the GC
clamped 338F (5¢-CGC CCG CCG CGC CCC CGC CCC Biodegradation experiments were carried out with
GGC CCG CCG CCC CCG CCC ACT CCT ACG GGA groundwater samples from a TCE-contaminated aquifer
GGC AGC-3¢). Approximately 1 ll of template was with the substrates (i.e., terpenes and yeast extract).
amplified with 1Æ5 ll of Taq polymerase (Sigma Chemi- Figure 1 illustrates the biotransformation of TCE in the
cals, Dorset, UK), 0Æ5 ll of each primer, 0Æ5 ll of presence of individual terpenes, yeast extract and the una-
100 mmol l)1 deoxynucleoside triphosphate on an MJRe- mended control. Biotransformation was calculated as the
search PTC-225 (Peltier Thermal Cycler; MJ Research per cent loss of TCE when compared to the autoclaved
Instruments, Watertown, MA, USA). The temperature control treatment, while the rate of TCE biotransformation
TCE concentration mmol l–1
120 120
100 100
80 80
60 60
40 40
20 20
0 0
0 2 4 6 8 10 12 14 16 18 0 2 4 6 8 10 12 14 16 18
Time (weeks) Time (weeks)
Figure 1 TCE concentration (lmol l)1) in microcosms during the experiment with different terpenoid (left panel) and control (right panel) treat-
ments: (d) linalool; (s) farnesol; (.) pulegone; (4) R-carvone; ( ) S-carvone; (h) cumene; (r) sterilized control; ()) TCE control and ( ) yeast
extract.
was the difference in TCE removed over the 16-week per- TCE
iod (112 days). R-(+) carvone-amended, S-()) carvone-
Yeast extract
amended, cumene-amended, and linalool-amended
groundwater resulted in significantly greater TCE Farnesol
biotransformation after 16 weeks, 82–88% (4–7 nmol (R )-Carvone
TCE ⁄ day; P < 0Æ05), than the treatments with pulegone,
Pulegone
farnesol and yeast extract (74–75%; 9–10 nmol TCE ⁄ day)
as well as the unamended control (61%; 15 nmol (S )-Carvone
TCE ⁄ day; P < 0Æ001). Cumene
Chloride originating from dechlorination of TCE
Linalool
increased sharply at week 5 in the unamended control
and in the yeast extract-amended treatment, whereas all
the other treatments showed a sharp increase in chloride
at week 7 (Fig. 2). R-(+) carvone accumulated the highest 0 2 4 6 8 10 12 14 16
amount of chloride by week 9 (181 lmol l)1) followed by Similarity index
S-()) carvone and cumene (133 and 122 lmol l)1),
Figure 3 Unweighted-pair group method using arithmetic averages
respectively. The sterilized control flask showed no degra-
dendrogram showing the similarity of denaturing gradient gel electro-
dation of TCE and no chloride accumulation. phoresis patterns of 16S rDNA extracted from the different micro-
The DGGE profile of the groundwater community cosms treatments.
between treatments was expectedly similar at the start of
the experiment, but a decline in the number of opera-
tional taxonomic units (OTUs) was observed from week
Discussion
1 through 13 (data not shown). The DGGE demonstrated
two major clusters of microbial community fingerprints: Terpene addition significantly increase the TCE biotrans-
(i) the unamended TCE treatment and the yeast extract- formation compared to the unamended control. The
amended treatment, and (ii) all the terpene-amended treatments containing R-(+) carvone, S-(+) carvone,
treatments (Fig. 3). Within the terpene cluster, there were cumene and linalool significantly stimulated the native
three subclusters (% TCE biotransfomation): (i) farnesol community to biotransform 82–88% of the TCE present
(74%) and R-(+) carvone (88%); (ii) pulegone (75%), in the respective microcosm treatment compared to the
S-()) carvone (86%) and cumene (87%); and (iii) lin- unamended treatment. Dabrock et al. (1992) observed
alool (82%). Notably, the two isomers S-carvone and 100% and 71% degradation of TCE with Pseudomonas sp.
R-carvone did not cluster together. JR1 and Rhodococcus erythropolis BD1 (isolated from
groundwater and TCE ⁄ toluene contaminated soil), using
cumene as a growth substrate (Dabrock et al. 1992), a
result which is consistent with the findings in this study
200 where 87% of the TCE was biotransformed in the pres-
ence of cumene. Other terpenes such as p-cymene, gera-
Chloride concentration (mmol l–1)
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radation of trichloroethylene by Methylosinus trichosporium KF707 labeled with gfp in microcosms contaminated with
is stimulated by low concentrations methane or methanol. PCB. J Microbiol Biotechnol 13, 463–468.
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