Genetic manipulations in aquaculture: a review of stock improvement by classical and modern technologies. Most of the genetically improved strains reaching the aquaculture industry were developed through traditional selective breeding. Chromosome-set and sex manipulations started to affect the industry during the 1980's and 1990's.
Genetic manipulations in aquaculture: a review of stock improvement by classical and modern technologies. Most of the genetically improved strains reaching the aquaculture industry were developed through traditional selective breeding. Chromosome-set and sex manipulations started to affect the industry during the 1980's and 1990's.
Genetic manipulations in aquaculture: a review of stock improvement by classical and modern technologies. Most of the genetically improved strains reaching the aquaculture industry were developed through traditional selective breeding. Chromosome-set and sex manipulations started to affect the industry during the 1980's and 1990's.
2001 Kluwer Academic Publishers. Printed in the Netherlands.
155 Genetic manipulations in aquaculture: a review of stock improvement by classical and modern technologies G. Hulata Department of Aquaculture, Agricultural Research Organization, The Volcani Center, PO Box 6, Bet Dagan 50250, Israel (Phone: +972 3 9683388; Fax: +972 3 9605667; E-mail: vlaqua@volcani.agri.gov.il) Key words: aquaculture genetics, chromosome-set manipulations, crossbreeding, DNA markers, hybridization, selection, sex manipulation, transgenesis Abstract The aim of this review was to highlight the extent to which the genetic technologies are implemented by the aquaculture industry. The review shows that some of the modern genetic technologies are already extensively applied by the diverse aquaculture industries, though not to the same extent for all important aquacultured species (according to FAO 1998 gures). Some species (common carp, Atlantic salmon, rainbow trout, channel catsh, Nile tilapia, and the Pacic oyster) received concentrated breeding efforts, while other major cultured species (Chinese and Indian carps and the giant tiger shrimp) received, so far, relatively limited attention, and a few species (Yesso scallop, blue mussel, white Amur bream, and milksh) have, apparently, not been genetically improved at all. Most of the genetically improved strains reaching the aquaculture industry were developed through traditional selective breeding (selection, crossbreeding, and hybridization). Emerging, more modern technologies for genetic manipulation seem to take 1020 years frombeing established experimentally until applications affect the industry. Thus, chromosome-set and sex manipulations started to affect the industry during the 1980s and 1990s. DNA marker technology and gene manipulations have yet hardly affected the industry. The former have not matured yet, but hold much promise. The latter could have affected the industry already had it not been restricted by public concern. Introduction Progress in genetic improvement of cultured sh and shellsh has been reviewed or discussed on several occasions during the last decade (e.g., Gjedrem, 1997; Benzie, 1998b; Knibb, Gorshkova &Gorshkov, 1998). The eld is regularly visited at the triennial Genetics in Aquaculture symposia (Gall & Chen, 1993; Doyle et al., 1996; McAndrew, Penman & Hulata, 1999; Proceedings of Genetics in Aquaculture VII (Towns- ville 2000), in preparation). It was recently the topic of an Australian symposium on the application of ge- netics to the aquaculture industry (see Lymberly et al., 2000) and some key presentations therein (Gjedrem, 2000; Jones, McPhee & Ruscoe, 2000; Knibb, 2000; Lawrence & Morrissy, 2000; Lymberly, 2000; Nell, Smith & McPhee, 2000; Ward et al., 2000). The status of aquaculture genetics at the turn of the mil- lennium has also been recently reviewed by Dunham et al. (2001). Thus, the aim of the current paper is not to comprehensively review the eld again, but rather to highlight the extent to which the genetic and ad- vanced reproductive technologies are implemented by the aquaculture industry. For intraspecic genetic improvement aquacultur- ists commonly use two major conventional breeding methods: crossbreeding and selection. Both are fre- quently integrated into comprehensive breeding pro- grams. Interspecic hybridization is also used in some aquaculture species. Crossbreeding has the advantage of simplicity and the often immediate and visible im- pact on animal performance. However, it is a static procedure in the sense that no further genetic pro- gress beyond that achieved in the rst generation can be expected if crossbreeding is the only component of the breeding program (Gjedrem, 1985). Selection schemes, on the other hand, can realize higher gains and progress at accelerated rates as long as additive 156 genetic variance exists for the traits of interest, as has been shown for farm animals as well as Atlantic salmon (Gjedrem, 1997). When a considerable com- ponent of the genetic variance in the population is non-additive, the breeding program should combine both selection and crossbreeding (Gjedrem, 1985). Until the early 1990s, a relatively small number of aquacultural breeding programs existed worldwide. However, it is hoped that improving and optimizing the design of such programs (e.g., Bentsen & Gjerde, 1994; Gjerde, Gjen & Vilanueva, 1996; Gjerde & Rye, 1997) will enable further gains in these as well as in new breeding programs. During the last decade or two, modern techno- logies (including sex and chromosome-set manipula- tions, gamete cryopreservation, transgenesis, genome mapping and use of DNA markers) have matured from the experimental phase and reached a stage where they can be incorporated in aquacultural breeding pro- grams. The extent to which each of those methods and technologies are actually advancing the world aquaculture industry is reviewed below. The review is based on over 30 responses received to a questionnaire distributed among ca. 200 aquaculture geneticists, as well as search of databases covering the scientic lit- erature. The data are presented in Table 1, which sum- marizes the information known and available to me, and does not necessarily list all cases of application of genetic technologies in the worldwide aquaculture industry. Selection programs As early as the 1920s, Embody and Hyford (1925) selected surviving brook trout (Salvelinus fontinalis Mitchill) from a population with endemic furuncul- osis and increased the survival rate from 2% in the initial population to 69% after three generations of selection. Another historical report of a selection pro- gram is the production of the Donaldson strain of rainbow trout (Oncorhynchus mykiss Walbaum) (Don- aldson & Olson, 1955). Donaldson began breeding work with rainbow trout in 1932 and reported signic- ant increase in growth and fecundity. After more than 35 years of directed individual selection, this strain of rainbow trout was appreciated by trout culturists in the USA and throughout the world and has been widely distributed (Parsons, 1998). In spite of these pioneering successes, very little selective breeding re- search was conducted in aquacultured species prior to 1970. Breeding work with common carp (Cyprinus car- pio Linnaeus), traditionally carried out in European closed populations, was based on phenotypic selec- tion of the largest individuals with some consideration of appearance (Wohlfarth, 1995). In the mid 1960s, two large-scale directed selection efforts were initiated in the common carp. Moav and Wohlfarths (1976) mass selection program, initiated in 1965, did not result in any improvement in growth rate. The reas- ons for this might have been one, or a combination of a few of the following reasons: the use of mass selection, which is inefcient in estimating breeding values for growth; the environmentally-based skewed size distribution of common carp, which means that largest individuals are not necessarily genetically su- perior; the accumulation of high level of inbreeding, which counteracted the selection performed; or the occurrence of limited additive genetic variance in the base population. Consequently, their efforts were di- verted to the initiation of a crossbreeding program (Hulata, 1995). At about the same time, a long- term program for selecting common carp resistant to dropsy, a serious infectious disease, for farming in the cold zones of North Caucasus (Krasnodar) was initiated (Kirpichnikov, 1993). The breeding program consisted of selection within the local and the Siberian wild carps from the river Amur, and crossing between them. Mass selection for resistance to dropsy and for high growth rate was carried out. The selection pro- gram was successful and resistance to dropsy has been improved. As a result of this successful breeding pro- gram, three stocks of Krasnodar common carp were developed, and heterotic crossbreds among them are used for commercial production in that region and other parts of the former Soviet Union (Kirpichnikov, 1993). Several large scale selection experiments and breeding programs, aiming at increasing growth rate, were conducted more recently, resulting in 1020% gain per generation, in channel catsh, Ictalurus punctatus Ranesque (Smitherman & Dunham, 1985; Dunham & Brummet, 1999), rainbow trout (Gjerde, 1986), Atlantic salmon, Salmo salar L. (Gjerde, 1986; Gjerde & Korsvoll, 1999; Gjedrem, 2000), coho salmon, Oncorhynchus kisutch Walbaum (Her- shberger et al., 1990; Myers et al., 2001), Nile tilapia, Oreochromis niloticus L. (Eknath et al., 1993; Bentsen et al., 1998; Basiao & Doyle, 1999; Lon- galong, Eknath & Bentsen, 1999; Rye & Eknath, 1999), and other tilapias (Brzeski & Doyle, 1995). Although the Norwegian trout and salmon, and the 157 Table 1. Aquacultured species (countries) to which different genetic manipulation technologies are applied in breeding programs or practical culture operations Technology Species involved in breeding programs Species involved in practical aquaculture Selection Atlantic salmon, Salmo salar (Chile, Iceland, Atlantic salmon, Salmo salar (Chile, Iceland, Ireland, Norway, Scotland); coho salmon, Ireland, Norway, Scotland); Pacic salmon, Oncorhynchus kisutch (Chile, USA); rainbow Oncorhynchus sp. (Canada); coho salmon, trout, Oncorhynchus mykiss (Chile, France, Oncorhynchus kisutch (Chile, USA); rainbow Norway, USA); brown trout, Salmo trutta trout, Oncorhynchus mykiss (Czech Republic, (France); channel catsh, Ictalurus punctatus France, Norway, USA,); silver bream (USA); Gilthead sea bream, Sparus auratus and (Bangladesh, Thailand, Vietnam); Gilthead Mediterranean sea bass, Dicentrarchus labrax sea bream, Sparus aurata and Mediterranean (Israel); turbot, Scophthalmus maximus (Spain, sea bass, Dicentrarchus labrax (Israel); Norway); rohu, Labeo rohita (India); Nile tilapia, common carp, Cyprinus carpio (China, Oreochromis niloticus (China, Egypt, Indonesia, Czech Republic, Estonia, Indonesia, Russia, Philippines Thailand); Oreochromis shiranus Vietnam); blunt snout brean, Megalobrama (Malawi); common carp, Cyprinus carpio (China, amblycephala (China); crucian carp, Czech Republic, Estonia, Indonesia, Russia, Carassius carassius (China); tench, Tinca Vietnam); blunt snout brean, Megalobrama tinca (Czech Republic); Nile tilapia, amblycephala (China); crucian carp, Carassius Oreochromis niloticus (China, Egypt, carassius (China); tench, Tinca tinca (Czech Indonesia, Malaysia, Philippines, Vietnam); Republic); Pacic oyster, Crassostrea gigas Pacic oyster, Crassostrea gigas (USA); (Australia, USA); Sydney rock oyster, Saccostrea channel catsh, Ictalurus punctatus (USA); glomerata (Australia); white Pacic shrimp, white Pacic shrimp, Litopenaeus vannamei Litopenaeus vannamei (Brazil, Colombia, Mexico, (USA); blue shrimp, Penaeus stylirostris USA); giant tiger shrimp, Penaeus monodon (Mexico); Kuruma shrimp, Penaeus japonicus, (Australia, Thailand, USA); Kuruma parwn, brown tiger prawn, P. esculentus and banana Penaeus japonicus (Australia) prawn, P. merguiensis (Australia) Crossbreeding Gilthead sea bream (Israel); rainbow trout (Ireland); Common carp (China, Czech Republic, Estonia, channel catsh (USA); common carp (China, Hungary, Israel, Russia, Thailand, Vietnam); Nile Czech Republic, Hungary); Nile tilapia (Malaysia); tilapia (Malaysia); channel catsh (USA); Pacic oyster (USA) Gilthead sea bream (Israel); rainbow trout (Ireland); Pacic oyster (USA) Hybridization Rainbow trout x Oncorhynchus clarkii Tilapia (China, Israel, Taiwan); channel and (France); channel and blue catsh (USA); Asian x blue catsh (USA); Asian x African catshes, African catshes, Clarias macrocephalus Clarias macrocephalus x C. gariepinus (Vietnam); x C. gariepinus (Vietnam) hybrid striped bass (USA, Israel, Taiwan) Sex manipulation Rainbow and brown trout (France) a ; Nile tilapia (China, Fiji, Philippines, channel catsh (USA); Nile tilapia (Philippines); Thailand, USA, Vietnam); Jordan tilapia (Israel); silver barb (Thailand) Atlantic salmon (Canada) and coho salmon (Canada, Japan); rainbow trout (France, Japan); amago and masu salmon, ayu and hirame (Japan) Gynogenesis/clonal Rainbow and brown trout (France) a ; Rainbow and brown trout (France) a ; lines Atlantic, amago, coho and masu salmon (Japan); common carp (China, Japan); hirame (Japan) ayu (Japan); common carp (China, Israel, Japan); goldsh and crucian carp (Japan) silver barb (Vietnam); red sea bream (Japan) Androgenesis Rainbow trout (Japan, USA); amago salmon (Japan); common carp (Japan, Netherlands) 158 Table 1. (continued) Technology Species involved in breeding programs Species involved in practical aquaculture Polyploidy Rainbow trout (France, Japan); brown trout Rainbow trout (Canada, France, Japan); (France) a ; Pacic oyster (USA); Catarina scallop, brown trout (France); Pacic oyster (Australia, Argopecten ventricosus, lion paw scallop, USA, Japan); Catarina scallop, Argopecten Nodipectenn subnodusus, red abalone, Haliotis rufescens ventricosus (Mexico); Atlantic salmon (Canada); (Mexico); loach, Misgurnus anguillicauda (Japan) amago and masu salmon, ayu and hirame (Japan); grass carp (USA) Gene transfer Pacic salmon (USA, Canada, New Zealand b ) DNA markers Atlantic salmon (Norway); coho salmon (Chile) Pacic salmon (Canada) Gamete/embryo Atlantic salmon (Canada, Norway, USA); Atlantic and Pacic salmon (Canada) cryopreservation Pacic salmon (Canada); rainbow trout (Norway); carps (China, Vietnam); Pacic oyster (USA) a Combination of gynogenesis and triploidy to produce all-female sterile trout. b Technology ready for application, but not implemented due to public concern and lack of marketing permit. Summary of data extracted from responses to a questionnaire, therefore not necessarily a complete list. GIFT Nile tilapia breeding programs have yet to be comprehensively and critically described in full de- tails, the products from these breeding programs are commercially used by the industry in the respective countries. An evaluation of the performance of the GIFT Nile tilapia in comparison to local stocks has been performed in several Asian countries, resulting in variable degree of superiority of the selected sh (Eknath et al., 1998). Several of these breeding pro- grams, which started as experimental projects, have been expanded to include the industry (e.g., Atlantic salmon), or continue by private companies (e.g., At- lantic salmon, rainbow trout, channel catsh, Nile tilapia). Domestication and selective breeding of the Kur- uma shrimp Penaeus japonicus Bate in Australia com- menced in 1993 (pilot research trials in collaboration with a commercial farm). Following the success of these trials (Hetzel et al., 2000), there has been a pro- gressive increase in the use of selectively bred stocks. Participating farms now stock up to 75% of their farm ponds with genetically improved stocks. A commer- cial prawn farming company pioneered commercial scale selective breeding of the banana shrimp P. mer- guiensis De Man in Australia. The use of domesticated selectively bred stocks now accounts for the majority of farmed P. merguiensis production in Australia. The brown tiger prawn P. esculentus Haswell (endemic to Australia) has also been successfully domesticated and selectively bred stocks are now being used in pilot-scale farm trials (Preston & Crocos, 2001, pers. comm.). The last decade has seen the initiation of many new local and/or national breeding programs in a range of countries and species, some in cooperation with the industry or private companies. Among those are the coho salmon breeding programs in Chile; Atlantic sal- mon breeding programs in Chile, Iceland (Jnasson, 1996; Jnasson, Gjerde & Gjedrem, 1997), Ireland and Scotland; rainbow trout in Chile, France and the USA; brown trout (Salmo trutta L.) in France; Oreo- chromis shiranus Boulenger in Malawi; multi-species tilapia hybrid in Israel (Hulata et al., 1999); channel catsh in the USA; Gilthead sea bream (Sparus aurata L.) and Mediterranean sea bass (Dicentrarchus lab- rax L.) in Israel; turbot (Scophthalmus maximus L.) in Norway and Spain; rohu (Labeo rohita Hamilton) in India; common carp in China, the Czech Repub- lic, Estonia, Russia and Vietnam; blunt snout bream (Megalobrama amblycephala Yih) in China (Li & Yang, 1996; Li & Cai, 2000); tench (Tinca tinca L.) in the Czech Republic; Pacic oyster (Crassostrea gigas Thunberg) in Australia (Ward et al., 2000) and Oregon, USA (Hedgecock et al., 1996); Sydney rock oyster (Saccostrea glomerata Gould) in Australia (Nell, Smith & McPhee, 2000); white Pacic shrimp (Litopenaeus vannamei Boone) in Brazil, Colombia, Mexico and the USA; Penaeus stylirostris in Mex- ico; P. japonicus, P. esculentus Haswell and P. mer- guiensis in Australia; and P. monodon Fabricius in Australia, Thailand and the USA. The products from these breeding programs will signicantly increase the use of genetically improved stocks in commercial aquaculture. 159 Crossbreeding and hybridization Intraspecic crossbreeding Intraspecic crossbreeding often increases growth rate of aquacultured species, although specic heterotic combinations need to be experimentally identied. Only a few commercially aquacultured species have been improved by crossbreeding. Variable propor- tions of crossbreds showing heterosis for growth rate have been obtained in the channel catsh; rainbow trout; common carp and the Pacic oyster. Heterosis was also found in survival, disease resistance and reproductive traits. Common carp crossbreds exhibiting heterosis are the basis for the carp culture industries in Israel, Vi- etnam, China and Hungary (Wohlfarth, 1993; Bakos & Gorda, 1995; Hulata, 1995). Based on experimental results, several crossbreds (two in Israel, three in Hun- gary) were chosen for commercial application, whose growth rate and other qualitative features gave about 20% better performance than the parental lines and other control strains. The majority (80%) of Hun- garian carp production was made of broodstocks of parental lines developed for crossbreeding and dissem- inated from Szarvas (Bakos & Gorda, 1995). Almost all Israeli carp production was made of broodstocks of parental lines developed for crossbreeding and dis- seminated from Dor (Wohlfarth, 1993; Hulata, 1995). In Indonesia, a breeding programbased on crossbreed- ing among 10 strains of common carp, some of which were developed using articial gynogenesis and sex- reversal, is being carried out (Sumantadinata, 1995). Signicant heterosis was observed in F 1 generations of crossbreeds among local Vietnamese varieties of common carp and foreign strains introduced from Hungary, Ukraine, Indonesia, and Czech Republic. Commercial crossbreeding between Vietnamese white carp and Hungarian carps, and between Hungarian and Indonesian yellow carp is being carried out (Thien & Trong, 1995). Crossbred channel catsh are widely cultured in the southeastern states of the USA. Farmers realized the superiority of crossbred catsh over pure strains and highly appreciate it (N. Chatakondi, Gold Kist Inc., personal communication). Crossbreeding to improve yield has been exper- imentally shown to be useful in the Pacic oyster (Hedgecock, McGoldrick & Bayne, 1995; Hedge- cock et al., 1996). The use of crossbreeding is being extended to the commercial level in the west coast of the USA, as a joint venture with private industry (Hedgecock, 2001, pers. comm.). Interspecic hybridization Interspecic hybridization was successfully obtained in many sh and shellsh genera and/or families (carps, catshes, cichlids, moronids, salmonids, spar- ids, sunshes, oysters, craysh, and others; e.g., Bakos, Krasznai & Marian, 1978; Chevassus, 1983; Refstie, 1983; Hulata, 1995; Harrell, 1997; Lawrence et al., 2000b; Dunham et al., 2001) as a means of improving production traits (e.g., growth rate, sur- vival, disease resistance) as well as to manipulate sex ratios. Sometimes an interspecic hybrid does not exhibit heterosis for any trait, but is still quite im- portant for aquaculture application as it expresses a good combination of benecial traits from both par- ent species. Most of the hybrids evaluated did not prove benecial for aquaculture. However, a few valu- able hybrids are commercially exploited. The sunshine bass, a hybrid between white bass (Morone chrysops Ranesque) female and the striped bass (M. saxatilis Walbaum) males grows faster and has better over- all culture characteristics (good osmoregulation, high thermal tolerance, resistance to stress and disease, high survival in culture and modied water bodies, and ability to utilize soy beans as a protein source) than either parent species (Harrell, 1997, 1998). This hybrid (and sometimes also the reciprocal, palmetto bass hybrid) is commercially cultured mainly in the USA (Van Olst & Carlberg, 1990), and recently also in Israel and Taiwan. Of the many hybrids among cyprinids tested, most suitable for aquaculture were the two reciprocal crosses between silver carp (Hypophthalmichthys mo- litrix Valenciennes) and bighead carp (Aristichthys nobilis Val.) which show higher survival and yield than the parental species (Issa et al., 1986). This hy- brid was commercially cultured in Israel during the 1970s to 1980s (and preferred over the pure silver carp due to its tameness) before it was abandoned due to the limited market for silver carp and species alike. Another cyprinid hybrid of interest is the grass carp (Ctenopharyngodon idella Val.) x bighead carp hy- brid, originally produced in Hungary (Bakos, Krasznai & Marian, 1978). The reported triploidy of this hybrid (Marian & Krasznai, 1978, 1979; Beck, Biggers & Dupree, 1980) attracted US sheries biologists look- ing for an efcient herbivorous sh to control aquatic vegetation (Sutton, Stanley & Miley, 1981; Shireman 160 & Smith, 1983) that is unable to naturalize in water systems. The incomplete triploidy of the hybrid (Allen & Stanley, 1983) has led to the development of large- scale induction techniques for sterile, triploid grass carp (Shelton, 1986, 1995). The intergeneric hybrids between common carp (Cyprinus carpio communis L.) and the Indian ma- jor carps catla (Catla catla Ham.), rohu (Labeo rohita Ham.) and mrigal (Cirrhinus mrigala Ham.) were also found to be triploid and sterile (Reddy et al., 1990). All three exhibit faster growth rate under monoculture, possess higher esh content and show lower seine es- capability than the maternal parent, but the former is the most viable (Khan et al., 1990). The rohu x catla hybrid grows almost as fast as pure catla, but has the small head of the rohu and is therefore useful in In- dian aquaculture. Catla x L. mbriatus Bloch hybrids were reported to have small heads of mbriatus and deep body and nearly equal growth rate to the catla. Dressing percentage was also improved in this hybrid (Basavaraju, Devaraj & Ayyar, 1995). The hybrid between the channel catsh female and the blue catsh (I. furcatus Val.) male exhibits het- erosis for several traits, and is the only one of 28 cat- sh hybrids evaluated exhibiting overdominance for economic traits (Smitherman & Dunham, 1985). The channel x blue hybrid has increased growth, growth uniformity, disease resistance, tolerance of low oxy- gen, dressing percentage and harvestability. Just one producer sold over 3 million hybrid sh to commercial catsh farmers during 19962000. Impressive produc- tion performance in terms of growth, survival, feed conversion and processing yield has been documented. It is the best catsh to raise, however, technology to produce it in commercial quantities is still a chal- lenge due to mating blocks between the two species (Chatakondi, 2000, pers. comm.). The main catsh cultured in Thailand is a cross between the African (Clarias gariepinus Burchell) and the Thai (C. macrocephalus Gnther) catsh. This cross combines fast growth rate of the African cat- sh with the desirable esh characters of the Thai catsh, although it does not grow as fast as the pure African catsh. The intergeneric hybrid between the two African catshes, Heterobranchus longilis (Val.) x Clarias gariepinus also show culture potential (Nwadukwe, 1995), though it is not clear whether this has been realized yet. Hybridization between tilapia species, to produce all-male progeny, was considered as a promising method to prevent uncontrolled reproduction, lead- ing to over-population of culture ponds. Hybridiza- tion between some species of tilapias such as Nile tilapia and the blue tilapia, O. aureus Steindachner, result in the production of predominantly male off- spring. This hybrid combines well the advantageous characteristics of both species, being more cold toler- ant than O. niloticus and less borrowing in the mud than O. aureus. It also has good salinity tolerance. Other tilapia crosses producing predominately male offspring include Nile tilapia x O. urolepis hornorum Trewavas or O. macrochir Boulenger, and O. mos- sambicus Peters x O. urolepis hornorum (Wohlfarth & Hulata, 1983; Penman & McAndrew, 2000). The most widespread culture of nearly all-male hybrid tilapias is in Israel. The potential of tilapia hybrids for culture is under exploited, due mainly to management problems (Wohlfarth, 1994). The major reason for this failure is the instability in produc- tion of all-male hybrids. All-male progeny are only produced from crossing pure species. Without care- ful broodstock management the system breaks down, and females start to appear in what was all-male hy- brid before. It appears that this breakdown is largely due to the inltration of parental broodstock by indi- viduals of a different genotype, predominantly hybrids between the two species involved, which are difcult to distinguish from their parents (Wohlfarth, 1994). Maintaining the purity of broodstock for hybridiza- tion is a difcult and tedious task for a well-managed tilapia hatchery, let alone ngerling production facil- ities in the less developed countries. Hybridization of tilapia has been largely suppressed by hormonal sex inversion, and more recently by breeding sex-inversed neo-males (see below), as alternative methods of pro- ducing all-male tilapias. It should be noted, however, that maintaining purity of broodstocks for the latter suffers from exactly the same problems. Female green sunsh (Lepomis cyanellus Rane- sque) x male bluegill (L. macrochirus Ranesque) hybrids also have improved overall performance for aquaculture systems and can be an alternative for aquaculture in regions of North America where the growing season is unsuitable for production of tra- ditional coldwater and warm-water species (Tidwell et al., 1994; Webster, Tiu & Tidwell, 1997). Salmonid hybrids do not express heterosis for growth rate (Chevassus, 1979). Some diploid sal- monid hybrids are potentially valuable because of disease resistance inherited from the parent species that is usually not cultured, but these hybrids have low viability. The induction of triploidy can increase the 161 hatchability and viability of these potentially import- ant hybrids (Parsons et al., 1986; Dorson, Chevassus & Torhy, 1991). The rainbow trout (Oncorhynchus mykiss) x char (Salvelinus spp.) triploid hybrids had general resistance to several pathogenic salmonid vir- uses (Dorson, Chevassus & Torhy, 1991), but these triploid hybrids grew slower than diploids. Triploid Pacic salmon hybrids can be seawater-acclimated earlier than diploids (Seeb et al., 1993). Triploidiza- tion of Atlantic salmon (Salmo salar) x brown trout (S. trutta) hybrids increased their survival and growth rate to a level comparable to Atlantic salmon (Galbreath & Thorgaard, 1996). Nevertheless, hybrid salmonids are not cultured commercially in signicant quantities. The widely used triploidization (see below) in the sal- mon industry may interfere with genetic improvement programs for salmonids (Blanc & Vallee, 1999). The recent nding that all-male progeny are ob- tained from hybridization among Australian fresh- water crayshes (Lawrence et al., 2000b) may soon be implemented by craysh growers who currently use manual sexing to establish all-male populations (Lawrence et al., 2000a). Chromosome-set and sex manipulations Worldwide expansion of aquaculture requires spe- cies or stocks more adapted to localized conditions and less likely to affect genetic diversity of natural populations in the event of escape. Sex control tech- nologies (including direct endocrine treatments (sex reversal) and indirect, combined endocrine and genetic manipulations (gynogenesis, androgenesis, induced polyploidization) * ) to prevent uncontrolled reproduc- tion, as well as to capitalize on differential culture performances of the sexes, were recently reviewed by Dunham (1990), Donaldson (1996), Pandian and Koteeswaran (1998), Piferrer (2001) and Beardmore, Mair and Lewis (2001). The indirect technique res- ults in monosex gametes (usually sperm) that enable * Gynogenesis is a reproductive manipulation resulting in all- maternal inheritance. Induction of gynogenesis involves egg activa- tion by genetically inactivated homologous or heterologous sperm, and diploidization by retention of the second polar body (meiotic gynogenesis), or suppression of the rst mitotic cleavage (mitotic gynogenesis). Androgenesis is a reproductive manipulation result- ing in all-paternal inheritance, involving genetic inactivation of the eggs genome and fertilization with haploid sperm (followed by dip- loidization) or diploid sperm (Pandian & Koteeswaran, 1998). Poly- loidy is the induction of individuals with extra (triploids, tetraploids) sets of chromosomes (Thorgaard, 1986). the production of monosex diploid or triploid popu- lations. Monosex female salmonids are produced by indirect feminization (Donaldson & Devlin, 1996) while sterile (monosex female triploid) salmonids are produced by indirect feminization followed by the use of pressure or temperature shock to induce trip- loidy (e.g., Johnstone, Mclay & Walsingham, 1991; Johnstone, 1993). It should be noted that these tech- nologies for production of chromosomally manipu- lated sh/shellsh, are often used in combination, or sequentially, for example, sex reversal of gyno- genetic offspring to produce neomales or neofemales for monosexing, or triploidization of gynogenetic fe- males to produce XXX females (see examples below). These technologies, which were intensively invest- igated for several decades have reached commercial application in many aquacultured species and coun- tries. The most remarkable examples are mentioned below. Already in the mid 1980s, all-female stocks ac- counted for over half of the production of UK trout farms, and the use of sterile trout, particularly for sport sheries and saltwater culture, was increasing (Bye & Lincoln, 1986). Gynogenesis and triploidy to pro- duce all-female sterile populations (Chourrout et al., 1986; Chourrout & Nakamura, 1987; Quillet et al., 1991) are commonly practiced in private trout farms throughout France (Guyomard, 2000, pers. comm.) and Japan (Arai, 2001). All-female and/or triploid sal- mon are widely cultured in Canada (Benfey, 1996) and on a smaller scale also in Japan (Arai, 2001). These are produced either by direct triploidization in- duction or by breeding tetraploid (XXXX) females with diploid (XX) males. The reasons for the use of all-female monosex seed in chinook salmon (Onco- rhynchus tshawystscha Walbaum) and coho salmon (O. kisutch) are to prevent losses arising from early maturation of males, and because the roe has recently become valuable and thus all-female populations are desirable. For Atlantic salmon in British Columbia, the reasons for monosex are for genetic containment purposes, since they have been shown to breed with Pacic salmon (Devlin, 2000, pers. comm.). Monosex (all-female) strains of Oncorhynchus species are being produced by gynogenesis and by the use of Y chro- mosomal DNA markers (Devlin et al., 1991, 1994). Triploidy is being explored by the Canadian salmon industry for containment purposes. Triploidy is re- quired by some Canadian Provinces for the culture of non-native salmonid species, for example, rain- bow trout in New Brunswick (Benfey, 1999, 2001). 162 However, the performance of the triploids has un- fortunately been not as good as that of diploids, so the industry is reluctant to adopt this technology un- less they have to (Devlin, 2000, pers. comm.). In Japan, culture of chromosomally manipulated sh and shellsh is regulated by the governmental Fish- eries Agency. Authorization has been granted for the commercial culture of all-female diploid or triploid salmonids (rainbow trout, coho, masu and yamame salmons), ayu (Plecoglossus altivelis Temminck and Schlegel) and oyster, as well as cloned hirame (Japan- ese ounder, Paralichthys olivaceus Temminck and Schlegel) (Yamamoto, 1999), in various prefectures (Arai, 2001). Triploidization seems to interfere with genetic im- provement programs for salmonids. Genetic analyses were carried out within two species (brown trout, Salmo trutta and rainbow trout), by recording several survival and growth traits in diploid and triploid pro- genies from the same sires. The survival and growth of triploid interspecic hybrids (O. mykiss female x S. trutta male or Salvelinus fontinalis male) displayed a special family variation hardly correlated with that of maternal or paternal monospecic controls. Therefore, the genetic improvement of such allo-triploids, as well as other (diploid) hybrids, would require the evalu- ation of breeders through progeny testing of the hybrid offspring. This might be a serious restriction to the development of interspecic hybridization in salmonid farming (Blanc & Valle, 1999). Similarly, Bonnet et al. (1999) indicate that due to interactions between ploidy and family parameters in rainbow and brown trout, selection of diploid male breeders for growth performance may not be effective for their triploid progeny. Triploid grass carp production for control of nuis- ance aquatic plants (Cassani, 1996) has been com- mercialized (multi-million $ business) in the USA (Shelton, 2001, pers. comm.). Early work on monosexing as a means of preventing naturalization (Shelton, 1986) was never applied because of the development of large-scale induction techniques for sterile triploids (Shelton, 1995). Combined techno- logy of gynogenesis and hormonal sex-reversal is be- ing developed for the production of all-female XXX- triploid grass carp and black carp (Mylopharyngodon piceus Richardson) that are completely sterile, unlike the XXY- or XYY-triploids that possess fragments of testes, and are thus able to produce some active sperm (Rothbard et al., 1997). Their potential has yet to be realized. YY male genotypes of Nile tilapia proved to be as viable and fertile as normal XY males, and to sire progeny that are nearly 100% males (Mair, 2000, pers. comm.). Their all-male progeny, XY, known as ge- netically male tilapia (GMT), are mass produced on a commercial scale, providing a reliable solution to the problem of early sexual maturation and uncontrolled reproduction leading to overpopulation in Nile tilapia culture (Mair et al., 1995, 1997; Tuan, Little & Mair, 1998, 1999; Abucay et al., 1999; Beardmore, Mair & Lewis, 2001). Results from on-station trials indicate that GMT have considerable benets under culture, signicantly increasing yields compared to mixed sex tilapia of the same strain or sex reversed male tilapia (Mair et al., 1995). The YY male line has been further selected for growth rate and for combining ability for GMT sex ratio, using intensive within-family selection in a synthetic female line (Abucay &Mair, 2000). Cul- ture of all-male Nile tilapia, based on the YY-GMT has been widely practiced in the Philippines since 1995 and in Thailand since 1997, and to a lesser extent in a number of other countries including China, Fiji, Vi- etnam, Central American countries, and USA (Mair, 2000, pers. comm.). A similar approach was also ap- plied to O. aureus. By breeding sex-inverted O. aureus males (which became ZZ neo-females) with normal (ZZ) males, all-male progeny are produced (Lahav, 1993; Rosenstein & Hulata, 1994). All-female com- mon carp populations (Cherfas et al., 1996) have been established in Israel, by sex reversing XX gynogenetic females to males (Gomelsky et al., 1994), and using these XX males for breeding. All-female seed released to commercial farms resulted in 1015% yield im- provement over existing commercial stocks. However, dissemination was halted due to a severe viral disease outbreak affecting the Israeli carp industry a few years ago. Polyploid technology has been commercially ap- plied in the Pacic oyster culture industry on the US West Coast since the mid-1980s, based on earlier work summarized by Allen, Downing and Chew (1989). The current push is making tetraploids, in order to make triploids by a natural 4N x 2N cross (Guo, DeBrosse & Allen, 1996; Ward et al., 2000), as already done in nsh (Arai, 2001). One US com- pany is already doing this. The research is beginning to put the crossbreeding technology together with the polyploid technology, but this is still experimental (Hedgecock, 2000, pers. comm.). Recent and on-going research will likely lead to commercial application of chromosome-set manipu- 163 lations for monosexing (coupled with sex reversal) or polyploidy to more species, including the Medi- terranean sea bass, Dicentrarchus labrax (Colombo et al., 1995; Chatain, 1998; Felip et al., 1998, 1999); European sea bream, Sparus aurata (Gor- shkov et al., 1998); red sea bream, Pagrus major Temminck and Schlegel (Arakawa, 1999); hirame, Paralichthys olivaceus (Tabata & Mizuta, 1997; Yamamoto, 1999); Thai silver barb, Puntius go- nionotus (Bleeker) (Pongthana et al., 1999; Koedprang & Na-Nakorn, 2000); African catsh, Clarias gar- iepinus (Volckaert et al., 1997; Vardi et al., 1999; Galbusera, Valckaert & Ollevier, 2000); Asian cat- sh, Clarias macrocephalus (Na-Nakorn, Rangsin & Witchasunkul, 1993); channel catsh, Ictalurus punctatus (Goudie et al., 1995); black carp, Mylopha- ryngodon piceus (Rothbard et al., 1997); paddlesh, Polyodon spathula Walbaum (Mims et al., 1997); hy- brid Lepomis (Wills, Paret & Sheehan, 1994); brook trout, Salvelinus fontinalis (Galbreath & Samples, 2000); Atlatic halibut, Hippoglossus hippoglossus L. (Hendry, Martin-Robichaud & Benfey, 1999); and Manila clam, Ruditapes philippinarium Adams and Reeve (Utting, Millican & Laing, 1996). Gamete cryopreservation The technology for gamete cryopreservation of aquatic species (nsh as well as shellsh) has pro- gressed signicantly during the last two decades, and reviewed recently by Diwan (2000), Gwo (2000), Lahnsteiner (2000), Suquet et al. (2000), Tiersch and Mazik (2000), and Chao and Liao (2001). For mollusks, the technology enables also cryopreserva- tion of late embryos and early larvae (Chao et al., 1997; Lin & Caho, 2000; Paniagura-Chavez et al., 2000). Protocols developed experimentally have been tested under production conditions (e.g., Fauvel et al., 1998) and evaluated economically (Caffey & Tier- sch, 2000a,b). While not a strictly genetic technology, gamete cryopreservation has a potential role in genetic conservation of wild resources and endangered wild or cultured stocks (e.g., McAndrew, Rana & Penman, 1993; Pullin et al., 1998; Gwo et al., 1999; Harvey, 2000), and can be incorporated into breeding pro- grams for storage of milt of specic genotypes (e.g., for monosexing, as discussed above) or for preserva- tion and dissemination of improved breeds (Van der Lende, Komen & Brascamp, 1998). Retrieval of the whole genome of endangered or extinct stock from cryopreserved milt can be done through androgenesis (e.g., Bercsenyi et al., 1998; Rothbard et al., 1999). Efcient use of the technology for all these applica- tions require the establishment of sperm (cryo)banks (Cross & Rogan, 1992; Lubzens et al., 1997), which already exist for some species (e.g., salmonids Cloud et al., 2000). Assistance is provided to aquaculture producers wishing to cryopreserve sperm from special salmon strains (Devlin, 2001, pers. comm.). The aquaculture industry in general, and those of us running large-scale breeding programs in partic- ular, seem to underestimate the genetic potential of establishing such spermbanks. Compared with cryo- preservation of dairy bull and other livestock sperm (Johnson, 2000) which is a mature, commercialized technology, commercialization of sh sperm conser- vation is somewhere between conception and infancy of the technology (Caffey & Tiersch, 2000a). In- creased commercialization is expected to occur when research protocols for sh sperm cryopreservation are applied in the private sector and markets for cryo- preserved sperm are established (Caffey & Tiersch, 2000b). Transgenesis The rst successful gene transfer into sh was reported fromChina in the mid 1980s. Since then, gene transfer has been accomplished in many aquacultured species and countries, in most cases involving the growth hor- mone gene. Signicant breakthrough occurred when promoters (Moav et al., 1992) and sh gene sequences (Houdebine & Chourrout, 1991; Devlin et al., 1994; Devlin et al., 1995a; Donaldson & Devlin, 1996) be- came available, since mammalian genes used in the early works were poorly expressed. The technology is still being experimentally rened, and applied to more species (e.g., Rahman, Iyengar & Maclean, 1997; Venugopal et al., 1997; Rahman et al., 1998; Hin- its & Moav, 1999; Kang et al., 1999; Rahman & Maclean, 1999; Li & Tsai, 2000; Sin et al., 2000; Tsai, 2000). The aquacultured species transformed include Atlantic salmon (Salmo salar), rainbow trout (On- corhynchus mykiss), tilapia (Oreochromis niloticus), carp (Cyprinus carpio), channel catsh (Ictalurus punctatus), African catsh (Clarias gariepinus) and northern pike (Esox lucius L.). In addition to these commercially orientated species, certain small model species have also been successfully exploited gold- sh (Carassius auratus L.), loach (Misgurnus fossilis 164 L.), medaka (Oryzias latipes Temminck and Schlegel) and zebrash (Danio rerio Hamilton) (see Maclean (1998) for a recent review). The scientic progress achieved in applying bio- technological manipulations to aquacultured species, and indeed to other edible crops and livestock, res- ulted in the production of genetically modied or- ganisms (GMOs). The scientic community did not neglect concerns about their possible escape to the environment if held outside experimental laborator- ies, as well as the safety of transgenic sh as food, and the possible unexpected consequences of gene transfer (pleiotropic effects). Unanticipated effects of gene insertion are likely to be reected (positively or negatively) in the shape, function or health of the transgenic shes, as was indeed observed (Chatakondi et al., 1994, 1995; Devlin et al., 1995b; Ostenfeld, Devlin & McLean, 1998; Stevens & Devlin, 2000a,b). The practical precautions which must be observed if this novel technology is to safely complement conven- tional sh production strategies were repeatedly dis- cussed (e.g., Kapuscinski & Hallerman, 1990, 1991; McEvoy, Gannon & Sreenan, 1992; Bartley & Haller- man, 1995; Kapuscinski & Hallerman, 1995; Hew & Fletcher, 1997; Knibb, 1997; Devlin, 1998; Volck- aert & Ollevier, 1998; Maclean & Laight, 2000; Hew & Fletcher, 2001). Berkowitz and Kryspin-Sorensen (1994) concluded that food safety evaluation of trans- genic shes has requirements similar to evaluations of the safety of added substances such as chemicals and drugs used orally or by injection. After about a little over a decade of very intens- ive research, the technology has reached the stage of commercial application (Entis, 1997). Unlike other genetic applications in aquaculture, which are taken up by a wide range of producers, this one is mainly led by large, corporate operations (e.g., in the USA, Canada, New Zealand) that have already produced fast-growing transgenic Atlantic and Pacic salmon, and will soon have similarly produced trout, tilapia and ounder. However, there is a growing public con- cern about the potential hazards of raising such sh, as exemplied by articles in Times (Thompson, 2000) and the New York Times (Yoon, 2000). This has led all producer groups in Canada to clearly indicate they do not want to utilize transgenic sh, and they do not support the research in any way. Consumer attitudes are such that it is difcult to market transgenic sal- mon, at least in the near future (Devlin, 2000, pers. comm.). Applications have also been led with the FDA for marketing in the USA, but no permits have been granted yet. Fearing of the consumer backlash, a major New Zealand producer of Chinook salmon de- cided to suspend their gene- modication experiments (Thompson, 2000), and the EC is maintaining a sim- ilar policy. The Canadian research group is conducting research only on risk assessment for the environment, in case the public and producers do change their mind in the future, and to compare the technology to tra- ditional approaches such as selection (Devlin, 2000, pers. comm.). While Entis (1997) believes that under- standing and acceptance will grow gradually, and the benets will become clear to most only in hindsight, it remains to be seen if the public will accept such products on the global marketplace any time soon. DNA markers, gene mapping, QTLs and marker-assisted selection DNA markers replaced allozymes (Utter, 1991) as the major analytical tool in genetic research in the mid 1980s, following Jeffreys, Wilson and Theins (1985) nding of the usefulness of the hypervariab- ility of the genome at the DNA level. Aquaculture and sheries geneticists quickly adopted them as well (e.g., Wright, 1990; Ward & Grewe, 1995; Wright & Bentzen, 1995). Genomic research and gene map- ping of aquatic organisms developed fast during the late 1990s. Novel genetic technologies involving the use of DNA-based tools are under development for a range of aquaculture species and applications, includ- ing species/strain identication and pedigree tracing (e.g., Heath et al., 1995; Thongpan et al., 1997; Perez- Enriquez, Takagi & Taniguchi, 1999; Tan et al., 1999; Norris, Bradley & Cunningham, 2000), conrmation of isogenicity in products of chromosome-set manip- ulations and clones (e.g., Young et al., 1996; Jen- neckens et al., 1999), linkage mapping (e.g., Alcivar- Warren et al., 1997; Kocher et al., 1998; Young et al., 1998; Liu et al., 1999a,b; Agresti et al., 2000; Li et al., 2000; McConnell et al., 2000; Sakamoto et al., 2000; Nichols et al., 2001), identication of QTLs (e.g., Jackson et al., 1998; Danzmann, Jackson & Ferguson, 1999; Moore et al., 1999; Palti, Parsons & Thorgaard 1999; Sakamoto et al., 1999), and other uses in breeding programs (Davis & Hetzel, 2000). Knowledge of linkages between marker and QTL alleles may be used for marker-assisted selec- tion (MAS), increasing the rate of genetic progress above that for selective breeding alone (Poompuang & Hallerman, 1997). While holding great promise for 1 6 5 Table 2. Genetic manipulation technologies that are applied in breeding programs (B) or practical culture (P) of the worlds 19 principal aquacultured species (FAO, 1998). Also marked are cases of experimental work (E) when not yet B or P Species World Selection Cross- Hybridi- Sex Gyno- Andro- Ployploidy Gene MAS Gamete production breeding zation manipulation genesis genesis transfer or cryopreser- (MT) QTL vation Pacic oyster 3,438,824 B, P B, P B, P E B Silver carp 3,308,419 a E b E B Grass carp 2,894,017 a E E B, P c E B Common carp 2,465,283 B, P B, P B, P B, P E, B E E E B Bighead carp 1,584,289 a E b B Manila clam 1,426,501 B E E Crucian carp 1,036,164 B, P E E E, B B, P E E Yesso scallop 856,217 Nile tilapia 793,931 B, P B, P P B, P E E E Rohu 754,677 B E E E Atlantic salmon 687,906 B, P E B, P E, B B, P E d E, B B Catla 628,757 E Giant tiger shrimp 577,990 B Mrigal 560,556 E E Blue mussel M. edulis 499,891 e E White Amur bream 449,282 Rainbow trout 438,013 B, P B, P B B, P B, P E, B B, P E B Milksh 369,003 Channel catsh 256,129 B, P B, P B, P B B E E E a Several Chinese population genetics studies (e.g., Wu & Wang, 1997a,b; Li, Lu & Bernatchez, 1998; Yang & Gui, 1999), but no record found for any breeding program. b The hybrid between these two species was commercially cultured in Israel in the 1970 1980s. Experimentally cultured in Vietnam. c In the USA. In China, where the bulk of production occurs, it is still experimental (Li, 2001). d Technology ready for application for Pacic salmon, but not implemented due to public concern and lack of marketing permit. e Numerous population genetics studies (e.g., Hilbish, Bayne & Day, 1994; Tremblay, Myrand & Sevigny, 1998; Daguin & Borsa, 1999; Penny & Hart, 1999), but no record found for any breeding program. 166 advancing breeding programs, these genomic meth- ods had, so far, only marginal commercial application. The notable exception is the identication of YY genotypes in salmonids using a DNA probe (Devlin et al., 1991, 1994), as mentioned previously under the monosexing section. Summary and conclusions This review shows that while we still have a long way to go in applying the existing scientic informa- tion and modern genetic technologies into the diverse aquaculture industries, some of them have already found their application. However, this is not true for all important aquacultured species, as can be seen from Table 2. While some species (common carp, Atlantic salmon, rainbow trout, channel catsh, Nile tilapia, and the Pacic oyster) received concentrated breeding efforts, other major cultured species (Chinese and In- dian carps and the giant tiger shrimp) received, so far, relatively limited attention, and a few species (Yesso scallop, blue mussel, white Amur bream, and milksh) have, apparently, not been genetically improved at all. The number of breeding programs, both in private sector and national levels, is increasing, and the use of stocks genetically improved through selective breeding, monosexing and polyploidy manipulations is gaining popularity. This trend seems to be stronger for nsh, and weaker for crustaceans (Benzie, 1998a) and mollusks. For the latter, however, commercial applications become evident, not only for the Pa- cic oyster (the number one farmed aquatic species in the world, according to FAOs latest statistics), for which Allens (1998) assessment was that pro- gress in commercial shellsh improvement programs are rudimentary, but for other molluscan species as well. Most of the genetically improved strains reach- ing the aquaculture industry were developed through traditional selective breeding (selection, crossbreeding and hybridization). Emerging, more modern techno- logies for genetic manipulation seem to take 1020 years from being established experimentally until ap- plications affect the industry. Chromosome-set and sex manipulations, which were intensively investig- ated in the 1970s and 1980s in several species, and are still being rened for others, started to affect the industry during the 1980s. Molecular techniques (DNA markers and gene manipulations), intensively investigated since the mid 1980s, reached rst applic- ation in the mid 1990s. In spite of attracting huge amounts of research funds, DNA marker technology has yet hardly affected the industry. This is also true for transgenic sh, which could have affected the in- dustry already had it not been restricted by public concern. Acknowledgements The author thanks the following colleagues who kindly supplied information by responding to a ques- tionnaire: C. Araneda (Chile), B. Argue (USA), T. Benfey (Canada), H.B. Bentsen (Norway), N. Chatakondi (USA), P. Crocos (Australia), T. Cross (Ireland), R.H. Devlin (Canada), P.F. Galbreath (USA), G.A.E. Gall (USA), A.J. Gharrett (USA), B. Gjerde (Norway), B. Gomelsky (USA), S. Gorshkov (Israel), R. Gross (Estonia), R. Guyomard (France), A. Hardjamulia (Indonesia), D. Hedgecock (USA), G. Hrstgen-Schwark/A. Mller-Belecke (Germany), A.M. Ibarra (Mexico), S. Li (China), O. 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