Professional Documents
Culture Documents
In the context of pharmacokinetics (what the body does to a drug), the distribution
has a strong influence on ADME properties (Absorption, Distribution, Metabolism,
and Excretion) of the drug. Hence the hydrophobicity of a compound (as measured
by its distribution coefficient) is a major determinant of how drug-like it is. More
specifically, in order for a drug to be orally absorbed, it normally must first pass
through lipid bilayers in the intestinal epithelium (a process known as transcellular
transport). For efficient transport, the drug must be hydrophobic enough to partition
into the lipid bilayer, but not so hydrophobic, that once it is in the bilayer, it will not
partition out again. Likewise, hydrophobicity plays a major role in determining
where drugs are distributed within the body after adsorption and as a consequence
how rapidly they are metabolized and excreted.
Determination of partition coefficient:
1) Shake-flask method
2) HPLC method
Chromatography
Definition:
The linear solvation equation approach has been used to describe the octanol/water
lipophilicity scale (logPoct) and the isocratic retention factors (log k) obtained using
reversed phase HPLC with acetonitrile. Both the octanol/water partition coefficients
and the RP-HPLC retention data obtained from the literature, showed good
correlation with the molecular descriptors such as size, excess molar refractivity, H-
bond acidity/basicity, and polarity/dipolarity. However, the impact of the H-bond
acidity term was very different on the two lipophilicity scales.
The H-bond acidity term was not significant in describing the octanol/water
lipophilicity, while the H-bond acidity of the molecules decreased significantly their
RP-HPLC retention. As the other terms had very similar impact on the two
lipophilicity scales, it made it possible to convert one scale to the other by
incorporating only the H-bond acidity of the compounds as is shown by the equation
below, where A is the compound H-bond acidity.
Using the simpler hydrogen bond donor counts (HBC) also helped to align the two
lipophilicity scales to each other.
The validity of the above equations was tested using a test set of 41 drug compounds
with our measured data. The log Poct values were estimated from isocratic RP-HPLC
retention data with the H-bond acidity term and counts, with an error of 0.284 and
0.325 log unit, respectively.
Renxiao Wang, Ying Gao And Luhua Lai in the year 1999 has reported procedure
for calculation of partition coefficient by atom-additive method. A new atom-
additive method was reported for calculating octanol/water partition
Coefficient (log P) of organic compounds. The method, XLOGP v2.0, gave
log P values by summing the contributions of component atoms and correction
factors. Altogether 90 atom types are used to classify carbon; nitrogen,
oxygen, sulfur, phosphorus and halogen atoms, and 10 correction factors were
used for some special substructures. The contributions of each atom type and
correction factor are derived by multivariate regression analysis of 1853
organic compounds with known experimental log P values. The correlation
coefficient (r) for fitting the whole set is 0.973 and the standard deviation (s)
was 0.349 log units. Calculation procedures demonstrates that their method
gave much better results than other atom-additive approaches and was at least
comparable to fragmental approaches. Because of the simple methodology, the
'missing fragment' problem does not occur in their method
Calculation Procedures
1} Hansch p-Method
Where Pow (PhX) is the partition coefficient of an aromatic derivative and Pow
(PhH) that of the parent compound.
(e.g. pCl = log Pow (C6H5Cl) -log Pow (C6H6) = 2,84 - 2,13 = 0,71).
According to its definition the p-method is applicable predominantly for aromatic
substitution. p-values for a large number of substituents have been tabulated (b)(c)
(d). They are used for the calculation of log Pow for aromatic molecules or
substructures.
2} Rekker Method
Where fi represents the different molecular fragment constants and ai the frequency
of their occurrence in the molecule under investigation. The correction terms can be
expressed as an integral multiple of one single constant Cm (so-called 'magic
constant'). The fragment constants fi and Cm were determined from a list of 1054
experimental Pow values (825 compounds) using multiple regression analysis (c)(h).
The determination of the interaction terms is carried out according to set rules
described in the literature (e)(h)(i).
Stage-1
The drugs were procured from the both in-house and outside for estimating
the logP values by TLC.
Stage-2
Thin layer chromatogram was developed by using octanol and water as
mobile phase solvents separately.
Stage-3
The detection of the spots was done and the Rf values were calculated under
both octanol and water.
Stage-4
LogP values for the drugs were also calculated using the computational tools
like ACD and VCC, so that we can compare and contrast the results.
EXPERIMENTAL WORK:
Materials:
Activation of plates
Aluminum plates which are precoated with silica gel GF were cut into
dimensions of 10 × 1.5 cm. These plates were kept for activation in hot air oven for
about 2 hour at 60 °C.
About 10-15 mg of the drug was dissolved in organic solvent like methanol or
acetic acid in fusion tubes.
Saturation of chamber
Two beakers were taken and 15 ml of water and octanol were poured into
them respectively and kept for saturation by covering both with petri dishes.
The solvent were allowed to raise above ¾th the whole plate length and then
allowed to dry using heat or current of air as appropriate.
The spot were detected and the distance traveled by the solute and solvent
was calculated from which retention factor in water and octanol were calculated.
Different values like R f (o /w), Rf (w/o), logRf (o), logRf (w), logRf (o)/ logRf (w) and
logRf (w) / logRf (o) were calculated and tabulated to find out which is the most
appropriate one to consider in the determination of partition coefficient for the drugs.
The logP values for the same drugs were calculated by using the
computational tools from ACD Labs. and online calculation was carried out using
VCC software.
Detection:
Examining the plate under ultraviolet light or in iodine chamber did the
detection of the compounds. The sensitivity of detection was thus related to the
absorptivity of the substance at that wavelength.
RESULTS AND DISCUSSION:
octanol water
DRUGS Dist. Dist. Dist. Dist. Rf o/w Rf w/o STRUCTURES
Solute Solvent Solute Solvent
(cm) (cm) (cm) (cm)
octanol water
DRUGS Rf o/w Rf w/o STRUCTURES H
N
O
O
Albendazole 1.39 8 0.7 8 1.985 0.503 NH CH3
H3C
S N
Cl N
NH
H3C N
H3C
CH3
HN CH3
OH
O NH
OH
O
O
Captopril 1.4 8 3.8 8 0.36 2.71 N
HS CH3
O
Cl OH
Chlorambucil 6.2 8 3.4 8 1.82 0.54 N
Cl
O
NH
O
S NH
O
Chlorpropamide 4.3 8 3.9 8 1.102 0.906 CH3
Cl
O
H3C
Dextromethorpha
1 8 0.2 8 5 0.2
n N
CH3
Cl OH
Diclofenac 6.8 8 3.2 8 2.125 0.470 NH
Cl
O
N
N N NH
Cl
octanol water
CH3
N O
Cl CH3
Indomethacin 5.7 8 3.14 8 1.815 0.550 H3C
O
OH
O
H
N O
O
O NH2
O CH3
O
Methocarbamol 1.4 8 6.1 8 0.223 4.470 O
HO
CH3
O
Naproxen 6.4 8 3.3 8 1.939 0.515
H3C OH
O
O
CH3
S
HN
O
O
Nimesulide 6.9 8 4.8 8 1.443 0.692
+
- N
O O
CH3
Br N
N
Cl
octanol water
O
H3C O
HN N
O S O
Sulphadiazine 0.8 8 1.9 8 0.421 2.375
NH2
N
O
N
Phenylbutazone 4 8 1.3 8 3.076 0.325
O
CH3
O
NH
O
S NH
O
O
NH +
N
O S -
H3C N
CH3
CH3
O
H
H3C N N
H3C
octanol water
O
H3C
OH
DRUGS Rf o/w Rf w/o STRUCTURES
NH NH2
Carbidopa 3.4 8 7.1 8 0.4788 2.088
OH
OH
10
8
logP
0
i a ol e
bi ne
N bam l e
l b az e
P h u l p A s i ne
R tam ne
e e
D o de
do p i n
p h h i de
D hlo ora top l
om o an
N r ol
hl ro s n
eo itid e
C h y ne
et m l
ho d i n
tro ro bu l
o e
pa
G eri ac
M eb tha n
ira ine
yl i a i n
C hl p o
m p a ci
ex rp m ri
To b u t zi n
At ui n
C B ime oxe
T h an i d
ifl n
M me ofe
r o
In Ibu xac
C C a nol
et en c
en had pi r
ar l l i
u o
h i
D icl rph
p i
p fen
a t do
do
od d a z
m
ca a z
or m ul
en ex
q
ap
Am en
b
Al
S
drugs
The graph was plotted for the various parameters like LogRf(o)/LogRf(w),
LogRf(w)/LogRf(o), Rfo/w and Reported LogP of respective drugs which are analysed.
The graph indicates that the Rfo/w values showed better resemblance with the reported
LogP values when compared to other calculated parameters.
Thus Rfo/w can be taken for the comparison with other standard values of LogP
obtained from ACD, VCC and Reported values.
Reported logP values vs. Rfo/w obtained from developed TLC method
7
6
5
4
logP
3
2
1
0
m e
ph h ide
N ro l
hl r s n
do pr in
om of n
ho da in
N bam e
y l ia n
m pa c il
ia le
G erid ac
R am e
x e
To uta ine
en e
ex rp m il
D orp e
pa
C hl p l
M ebe tha n
C hyl e
ap o
Th an ide
Ph lph s e
bi e
C Ca olo
ira in
C B im e x e
D icl ha
r l
en ad piri
D hlo ora topr
ut n
iflo n
At uin
h id
M m e ofe
p in
in
In u ac
c a zo
ar lin
od az o
et n c
tro ro bu
p en
lb z o
at o
or om ul
do
en ex
eo itid
b z
et m
q
A
Am end
Ib
b
Al
Su
drugs
The above graph indicates that the reported values are quite closer to the Rfo/w values.
Hence, it indicates that developed method for determining partition coefficient
has good correlation with the reported experimental values. This suggests that
the developed TLC method will also be useful in calculating logP value for a
drug in the drug development process.
Graph of reported logP values vs. ACD computationally calculated logP values
logP
A
l
D
D
D
D
D
D
A b en D
m d
od a
ia zol
A qu e
t in
C C a en o e
C h
D hl lor pto lol
ex o r a p
tro pr mb ril
m op uc
et am il
ho i
D d
D ic rp e
om lo ha
f n
G p er en a
at id c
ifl o
o n
In Ibu xa e
d o p ci
M m ro n
M eb et fe
et e h a n
ho nd c
ca az in
r o
N ba le
N p m a
drugs
C B im ro ol
h l r e xe
VËgReported Log P (dr
o r o su n
ph mh lid
e n ex e
ira in
Su m e
Ph lp A s in
en h a p i e
ìV
y di rin
To lbu azi
lb taz ne
u o
R tam ne
Th an id
eo itid e
p
C hy ine
ar ll
bi in
better with the ACD values, as both the values were very close for most of the drugs.
do e
As ACD claims that they are the leaders in the world for calculating logP values, the
above graph also indicated the same. The reported logP values were correlating
pa
Reported logP values vs. VCC computationally calculated logP values
6
5
4
logP
3
2
1
0
m e
en ex e
do pr in
hl r es en
N pro ol
om lo an
ho d in
N bamle
y l ia in
et m l
G erid ac
ia ole
R am e
e e
iflo ne
lb z o e
D o e
tro ro bu l
M eb th n
pa
C hlo apt lol
eo itid e
C hy l e
Ph lp As ine
bi e
m pa c i
ex rp m ri
ira in
ph h lid
ut n
At uin
h id
To buta z in
M m e ofe
Th an id
p in
r o
ar lin
In Ibu x ac
en had pir
et en ac
D hlo ra op
D ic rph
p fen
x
C C no
at o
do
ca az
od az
or om u
q
d
Am en
a
im
b
Al
C B
Su
drugs
From the above graph it was found that the reported logP values were also
correlating better with the VCC online calculated logP values, as both the values
were very close for most of the drugs.
The consolidated graph of reported logP values vs. ACD, VCC, Rfo/w calculated
logP values
7
6
5
4
logP
3
2
1
0
m e
ph h ide
N ro l
hl r s n
do pr in
om of n
ho da in
N bam e
y l ia n
m pa c il
ia le
G erid ac
R am e
x e
To uta ine
en e
ex rp m il
D orp e
pa
C hl p l
M ebe tha n
C hyl e
ap o
Th an ide
Ph lph s e
bi e
C Ca olo
ira in
C B im e x e
D icl ha
r l
en ad piri
D hlo ora topr
ut n
iflo n
At uin
h id
M m e ofe
p in
in
In u ac
c a zo
ar lin
od az o
et n c
tro ro bu
p en
lb z o
at o
or om ul
do
en ex
eo itid
b z
et m
q
A
Am end
Ib
b
Al
Su
drugs
The consolidated graph between reported logP values vs. ACD, VCC and Rfo/w
indicates that, all these values were correlating with each other except in few cases.
Among them it is quite clear that ACD computational values were very much
correlating when compared to the VCC online calculated values. The VCC online
calculated values were better correlating when compared to the developed method.
Since, the new developed method values were correlating quite closer to the reported
values we have opinion that this simple TLC method can be further improved to get
still even better results.
In an attempt to establish the reason for this correlation we would like to plot a scale
shown below. We assume that the reason for such correlation through the developed
TLC method may because of the importance of partition coefficient in development
of chromatograph who’s relative migration varies depending upon the structure of
that particular drug. Since, we developed a chromatogram through a distance of 10
cm, the division of respective values multiplied by 10 is giving the values of partition
coefficient.
-10 0 +10
The above scale like a pH scale indicates the solubility of drug in water towards
negative side and in octanol towards positive side with respect to partition
coefficient. Drug if more soluble in octanol will travel towards positive side on an
above scale and if it is soluble in water will travel towards negative side. As
retardation factor refers to the distance traveled by drug in octanol and water the
above scale resembles the TLC plate of length 10 cm. Retardation factor of drug in
octanol-water if more indicates the partitioning will be more and thus solubility of
corresponding drug will be obviously more in octanol.
Drug having more solubility in water will travel towards negative side, which
results in low retardation factor and less partitioning.
Since, there are many disadvantages with shake flask method as it requires
development of the separate estimation procedure either titrimetric or
spectrophotometric methods. If the method requires titration, then accuracy of the
result will be under question mark due to various factors, which affect the accuracy
of the result. Where as in HPLC method, instrumentation especially columns and
solvents are the major cost effective factors which affects one not to go for HPLC
method, specially for academicians.
The new method was developed with the aid of TLC. The thin layer chromatogram
was developed using octanol and water as a mobile phase on 10 cm length TLC
plate. The appropriate way to calculate the logP values through the TLC was found
to be taking the value of Rf o/w directly, as it was matching better with the reported
logP values. In order to evaluate the developed method we calculated logP values
computationally by using ACD and VCC. Even though the present method values
were quite less occurate when compared to the ACD and VCC, it is convenient and
easy experimental method which can be as an alternative to shake flask and HPLC
methods as both these methods suffer from many disadvantages specially need of
sophisticated instruments and lack of accuracy.
REFERENCES:
1. A.H. Beckett and J.B. Stenlake. Text Book of Practical Pharmaceutical
4. Claire Barzanti, Rebecca Evans, Jérémy Fouquet, Léonard Gouzin and Nicola
6. Renxiao Wang, Ying Gao and Luhua Lai, Perspectives In Drug Discovery and
7. W.E. Hammers, G.J Meurs and C.L. De Ligny , J. Chrom., 1982, 247, 1-13.
8. S. Ravi Sankar, Text Book Of Pharmaceutical Analysis 3rd ed. Rx, Tiruneveli
2001, 14.1-14.12.
9. R.F. Rekker and H.M. de.Kort, Euro J. Med. Chem., 1979, 14, 479.
10. A.Leo, C.Hansch and D.Elkins, Partition Coefficients and their Uses. Chem.
2005.
13.www.acdlabs/chemsketch.com
14.www.drugbank.com
15.www.vcc/logPcalculator.com