Professional Documents
Culture Documents
Original article
Plant Molecular Biology & Biotechnology Lab, Centre for Biodiversity, Functional & Integrative Genomics, FCUL, Campo Grande, 1749-016 Lisboa, Portugal
Department of Statistics and Operational Research, CEAUL, FCUL, Campo Grande, 1749-016 Lisboa, Portugal
a r t i c l e i n f o
a b s t r a c t
Article history:
Received 18 June 2008
Received in revised form
22 December 2008
Accepted 5 February 2009
Available online 21 February 2009
Handling editor: Kristina Lindstrom
In order to contribute to the knowledge on the genes involved in the early steps of ectomycorrhiza
development, the transcriptional response of Castanea sativa (European chestnut) during the initial
contact (6 and 12 h) with Pisolithus tinctorius was analysed by microarray. This study revealed that
among the regulated plant genes, a substantial number of up-regulated transcripts showed homology
with genes encoding for proteins involved in stress and defense responses, (a cystatin, a cystatin-like
protein, a defensin and a universal stress protein). Early contact with the fungal mycelium also altered
expression of genes that are putatively involved in cellular processes like signal transduction and
communication (receptor kinase-related protein), protein fate (papain-like cystein proteinase), and water
transport facilitation (water channel MipK protein). Expression proling of the early contact between
C. sativa and P. tinctorius revealed that changes in gene expression occur few hours after contact, long
before the development of a functional mycorrhiza. The induction of genes involved in stress and defense
suggests that the host plant reacts rapidly to the presence of the mycobiont eliciting a defense programme similar to that described for pathogenic interactions. Another plant response was the repression
of genes normally implicated in water stress accounting for a water stress relief due to the initial contact
with the ectomycorrhizal fungus.
2009 Elsevier Masson SAS. All rights reserved.
Keywords:
Castanea sativa
cDNA microarray
Differentially expressed
Ectomycorrhiza (ECM)
Pisolithus tinctorius
1. Introduction
Mycorrhizas are mutually benecial associations between plant
roots and highly specialised root-inhabiting fungi. The functional
basis of mycorrhizal symbiosis is the exchange of fungus-derived
mineral nutrients with plant-derived carbohydrates. In temperate
and boreal forests ectomycorrhizas (ECM) serve as a major organ
for nutrient uptake by trees, and it is estimated that up to 95% of the
short roots in these ecosystems form ECM [1]. This symbiosis is
essential for the stability of forest ecosystems protecting the root
system from pathogen attack and from adverse abiotic soil conditions like water stress [1]. The development of an ECM root
comprises four stages: pre-infection, initiation, differentiation and
276
277
278
Table 1
QRT-PCR primers, targets and expected amplicons.
Target sequence (organism)
Accession
Primer sequence
Amplicon (bp)
ES880903
241
EV253703
EV253704
EU016360
AF374709
GGGTGATGTCTCAAAAACAA (F)
ATAACCTGCTTAACAAATCC (Rev)
ACAAGGTACTCTACATCAGG (F)
GGAATTGGGGACTCTTGGAT (Rev)
ATGTTGCCCTTGACTATGAG (F)
AGATGGCTGGAAGAGGACT (Rev)
CATCGAGTTTTTGAACGCA (F)
AACCACCGATTGTCGTG (Rev)
TCGAAATCTCAAACCAAG (F)
GCAAAGTTGGAGAAGCAT (Rev)
147
105
189
203
Fig. 1. Array quality and variation within and between experiments. Box plot graphs of
normalized log2 ratio values for the 6 h (a) and 12 h (b) plantfungus contact microarrays. Box plots 1, 2 and 3 represent biological replicates (arrays hybridized with
uorescent cDNAs prepared from different RNA extracts from inoculated/control
roots); box plots 1_rev, 2_rev and 3_rev represent the technical replicates of each
biological replicate, in which Cy5 was used to label control roots and Cy3 was used to
label inoculated roots (reverse dye).
279
Table 2
Differential expression of Castanea sativa genes after 6 h and 12 h of contact with Pisolithus tinctorius assessed by microarray analysis.
GenBank ID
E-value
Fold changeb
6h
12 h
1e15
9e29
3e21
1e47
2e14
3.56
4.06
4.19
6.95
2.30
8e34
5.67
4e54
3.19
2.78
1e15
2.02
35
11.53
4.68
3.75
4e
2e9
6e30
Database match (blast x), corresponding species, accession number and references.
Fold change between inoculated roots and non inoculated roots.
Database match (megablast), corresponding species and accession number.
Table 3
Comparison between fold changes obtained by microarrays and quantitative realtime PCR for genes expressed in Castanea sativa roots inoculated with Pisolithus
tinctorius mycelium for 6 h (two biological replicates) and 12 h (three biological
replicates).
Fold change
Microarray
QRT-PCR
Isoavone-redutase
Receptor-like kinase
6h
12 h
6h
12 h
1.83
0.82
1.85
0.70
1.67
4.68
5.50
68.15
280
Acknowledgments
We thank Dr. Silvia Ferreira for the critical reading of the
manuscript. The authors are grateful to the anonymous reviewer
for the constructive suggestions. Financial support for this work
was obtained from Fundaao para a Ciencia e Tecnologia through
fellowship (SFRH/BD/825/2000) and the projects FCT/POCI 2010
and PTDC/MAT/64353/2006.
References
[1] S. Smith, D. Read, Mycorrhizal Symbiosis, Academic Press, London, 1997.
[2] F. Martin, F. Lapeyrie, D. Tagu, Altered gene expression during ectomycorrhiza
development, in: P. Lemke, G. Caroll (Eds.), The Mycota, Springer, Berlin, 1997,
pp. 223242.
[3] D. Tagu, F. Lapeyrie, F. Martin, The ectomycorrhizal symbiosis: genetics and
development, Plant and Soil 244 (2002) 97105.
[4] F. Martin, A. Kohler, S. Duplessis, Living in harmony in the wood underground:
ectomycorrhizal genomics, Curr. Opin. Plant Biol. 10 (2007) 204210.
[5] F. Martin, S. Duplessis, F. Ditengou, H. Lagrange, C. Voiblet, F. Lapeyrie,
Developmental cross talking in the ectomycorrhizal symbiosis: signals and
communication genes, New Phytol. 1511 (2001) 145154.
[6] C. Voiblet, S. Duplessis, N. Encelot, F. Martin, Identication of symbiosisregulated genes in Eucalyptus globulusPisolithus tinctorius ectomycorrhiza by
differential hybridization of arrayed cDNAs, Plant J. 25 (2001) 181191.
[7] T. Johansson, A. Le Quere, D. Ahren, B. Soderstrom, R. Erlandsson, J. Lundeberg,
M. Uhlen, A. Tunlid, Transcriptional responses of Paxillus involutus and Betula
pendula during formation of ectomycorrhizal root tissue, Mol. Plant Microbe.
Interact. 17 (2004) 202215.
[8] S. Duplessis, P. Courty, D. Tagu, F. Martin, Transcript patterns associated with
ectomycorrhiza development in Eucalyptus globulus and Pisolithus microcarpus, New Phytol. 165 (2005) 599611.
[9] A. Le Quere, D.P. Wright, B. Soderstrom, A. Tunlid, T. Johansson, Global patterns
of gene regulation associated with the development of ectomycorrhiza
between Birch (Betula pendula Roth.) and Paxillus involutus (Batsch) Fr. Mol.
Plant Microbe. Interact. 18 (2005) 659673.
[10] D.P. Wright, T. Johansson, A. Le Quere, B. Soderstrom, A. Tunlid, Spatial
patterns of gene expression in the extramatrical mycelium and mycorrhizal
root tips formed by the ectomycorrhizal fungus Paxillus involutus in association with birch (Betula pendula) seedlings in soil microcosms, New Phytol. 167
(2005) 579596.
[11] G.K. Podila, J. Zheng, S. Balasubramanian, S. Sundaram, S. Hiremath, J.H. Brand,
M.J. Hymes, Fungal gene expression in early symbiotic interactions between
Laccaria bicolor and red pine, Plant and Soil 244 (2002) 117128.
281
282
[39] M. Pernas, E. Lopez-Solanilla, R. Sanchez-Monge, G. Salcedo, P. RodrguezPalenzuela, Antifungal activity of a plant cystatin, Mol. Plant Microbe. Interact.
12 (1999) 624627.
[40] H. Kuster, N. Hohnjec, F. Krajinski, F. El Yahyaoui, K. Manthey, J. Gouzy,
M. Dondrup, F. Meyer, J. Kalinowski, L. Brechenmacher, D. van Tuinen,
V. Gianinazzi-Pearson, A. Puhler, P. Gamas, A. Becker, Construction and validation of cDNA-based Mt6k-RIT macro- and microarrays to explore root
endosymbioses in the model legume Medicago truncatula, J. Biotechnol. 108
(2004) 95113.
[41] N. Hohnjec, M.E. Vieweg, A. Puhler, A. Becker, H. Kuster, Overlaps in the
transcriptional proles of Medicago truncatula roots inoculated with two
different Glomus fungi provide insights into the genetic program activated
during arbuscular mycorrhiza, Plant Physiol. 137 (2005) 12831301.
[42] P.B. Pelegrini, O.L. Franco, Plant-thionins: novel insights on the mechanism of
action of a multi-functional class of defense proteins, Int. J. Biochem. Cell Biol.
37 (2005) 22392253.
[43] F. Garca-Olmedo, A. Molina, A. Segura, M. Moreno, The defensive role of
nonspecic lipid-transfer proteins in plants, Trends Microbiol. 3 (1995) 7274.
[44] A. Molina, F. Garca-Olmedo, Enhanced tolerance to bacterial pathogens
caused by the transgenic expression of barley lipid transfer protein LTP2, Plant
J. 12 (1997) 669675.
[45] J.P. Blein, P. Coutos-Thevenot, D. Marion, M. Ponchet, From elicitins to lipidtransfer proteins: a new insight in cell signalling involved in plant defence
mechanisms, Trends Plant Sci. 7 (2002) 293296.
[46] S. Herrmann, F. Buscot, Cross talks at the morphogenetic, physiological and
gene regulation levels between the mycobiont Piloderma croceum and oak
microcuttings (Quercus robur) during formation of ectomycorrhizas, Phytochemistry 68 (2007) 5267.
[47] S.T. Kim, S.G. Kim, D.H. Hwang, S.Y. Kang, H.J. Kim, B.H. Lee, J.J. Lee,
K.Y. Kang, Proteomic analysis of pathogen-responsive proteins from rice
leaves induced by rice blast fungus, Magnaporthe grisea, Proteomics 4
(2004) 35693578.
[48] B.R. Acharya, S. Raina, S.B. Maqbool, G. Jagadeeswaran, S.L. Mosher, J. Appel,
H.M.C. Schultz, D.F. Klessig, R. Raina, Overexpression of CRK13, an Arabidopsis
cysteine-rich receptor-like kinase, results in enhanced resistance to Pseudomonas syringae, Plant J. 50 (2007) 488499.
[49] M. Parniske, Arbuscular mycorrhiza: the mother of plant root endosymbioses,
Nat. Rev. Microbiol. 6 (2008) 763775.
[50] G. Tuskan, S. DiFazio, S. Jansson, Bohlmann, I. Grogoriev, U. Hellsten,
N. Putnam, S. Ralph, S. Rombauts, A. Salamov, et al., The genome of black
cottonwood, Populus trichocarpa, Science 313 (2006) 15961604.
[51] D. Tagu, C. Bastien, P. Faivre-Rampant, J. Garbaye, P. Vion, M. Villar, F. Martin,
Genetic analysis of phenotypic variation for ectomycorrhiza formation in an
interspecic F1 poplar full-sib family, Mycorrhiza 15 (2005) 8791.
[52] B.J. Haas, N. Volfovsky, C.D. Town, M. Troukhan, N. Alexandrov, K.A. Feldmann,
R.B. Flavell, O. White, S.L. Salzberg, Full length messenger RNA sequences greatly
improve genome annotation, Genome Biol. 3 (6) (2002) research0029.1
0029.12.
[53] R. Schaeitner, E. Wilhelm, Isolation of wound-responsive genes from
chestnut (Castanea sativa) microstems by mRNA display and their differential expression upon wounding and infection with the chestnut blight
fungus (Chryphonectria parasitica), Physiol. Mol. Plant Pathol. 61 (2002)
339348.
[54] H. Kirch, R. Vera-Estrella, D. Golldack, F. Quigley, C.B. Michalowski, B.J. Barkla,
H.J. Bohnert, Expression of water channel proteins in Mesembryanthemum
crystallinum, Plant Physiol. 123 (2000) 111124.