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2013 John Wiley & Sons A/S. Published by John Wiley & Sons Ltd
ACTA PSYCHIATRICA SCANDINAVICA
Review
E. Kolshus1,2, V. S. Dalton1,
K. M. Ryan1, D. M. McLoughlin1,2
1
Summations
A single microRNA can regulate hundreds of genes, making it a particularly appealing target for
many psychiatric disorders, where no single gene underlies heritability.
The exact nature and extent of dysregulation of microRNAs in psychiatric disorders is yet to be
determined.
Current studies are heterogeneous, and even studies of same source material have delivered disparate
ndings.
Considerable obstacles remain before microRNAs can be used as therapeutic targets in psychiatric
disorders.
241
Kolshus et al.
Introduction
MicroRNAs
Background and function
3
5
4
Fig. 1. MicroRNA biogenesis. Mature microRNAs (miRNAs) are formed following a series of steps involving (1) RNA transcription to generate a primary miRNA (pri-miRNA), followed by (2) Rnase modication by Drosha to form a precursor miRNA (premiRNA) which is (3) exported from the nucleus to the cytoplasm by exportin-5 and cleaved to form a 22 base pair miRNA/miRNA*
duplex by Dicer (4). From the duplex, one miRNA is then preferentially loaded into a RNA-induced silencing complex (RISC) where
it (5) binds to a target messengerRNA (mRNA) transcript, preventing translation.
Deletions, amplications or single nucleotide polymorphisms (SNPs) in a miRNA can lead to its
over- or underexpression with ensuing changes to
its targets. Alternatively, alterations in the miRNA-processing machinery or SNPs in the target
region for a miRNA could lead to inappropriate
targeting of mRNAs (25).
The discovery of miRNAs and their role in regulation of gene expression has led to a revision of
the prevailing central dogma of genetics. Recent
ndings have highlighted the regulatory role of
miRNAs and other non-coding genetic material
(26). It is therefore no surprise that dysregulation
of miRNAs has been linked with human pathologies such as major depressive disorder (MDD),
schizophrenia and cancer (2729). It is hoped that
further understanding of the role of miRNAs will
elucidate molecular mechanisms of psychiatric illness, act as biomarkers and potentially become
novel therapeutic targets (19). In other medical
elds, miRNAs have already been identied as biomarkers (30) and therapeutic targets (31).
miRNA analysis
Kolshus et al.
in terms of variations in pre- and postmortem conditions, diagnostic uncertainty and usually small
sample sizes (32). CSF sampling has the advantage
of the ability of tracking dynamic changes, but
requires an invasive procedure that may not be
acceptable to patients, especially for repeated sampling, and may limit ethical approval; therefore,
studies using CSF are relatively rare. In contrast,
peripheral blood sampling provides the benet of
easy and acceptable access, and miRNAs are present in a remarkably stable form in human blood.
There is considerable communication between the
central nervous system (CNS) and the immune system, and lymphocytes express several of the same
neurotransmitter receptors seen in the CNS (33).
Interestingly, miRNAs specic to brain diseases
can be detected in peripheral blood, and peripheral
blood levels can correlate with brain levels (34).
To analyse miRNA levels in these sample,
researchers may use deep sequencing technology,
microarrays or quantitative reverse-transcriptase
polymerase chain reaction (qRT-PCR) techniques
(35). Deep sequencing (also known as next-generation sequencing) is a relatively recent technological
advance that allows for quantication of every
miRNA in a sample. Such analysis enables robust
quantication of known miRNAs as well as potential novel miRNA discovery. It is, however, a
costly procedure, which limits its widespread use.
Microarrays are less costly, but rely on a priori
knowledge of sequences of interest. These consist
of chips with probes for known miRNAs, usually
covering hundreds of miRNAs. miRNAs in a sample will then hybridise to the probes, allowing for
absolute or relative quantication. Typically, miRNAs identied by sequencing or array approaches
are then conrmed using qRT-PCR. Because miRNAs are too short to accommodate standard primer pairs, they are rst lengthened by stemloop
reverse transcription (36). An essential element of
miRNA analysis is the use of bioinformatic
approaches and databases to link identied miRNAs with their target genes and biological function. This in silico approach is crucial due to the
ability of miRNAs to target hundreds of genes and
complex pathways (35). A separate approach
includes genotyping patients and controls to identify structural variants in miRNAs, miRNA targets or miRNA biosynthesis machinery that may
be associated with psychiatric phenotypes.
miRNA nomenclature
followed by a dash and a number, usually indicating the order of naming. pre-miRNAs refer to precursor miRNAs and use the prex mir. miRNAs
with nearly identical sequences except one or two
nucleotides are annotated with an additional lower
case letter; for example, miR-26a and miR-26b
would be very closely related. Some of the rst
miRNAs to be discovered were the let family of
miRNAs. At that time, the existence of the amount
of miRNAs now discovered was not known, and
they therefore do not follow the numerical system.
If two miRNAs originate from opposite arms of
the same pre-miRNA (which is in a hairpin loop,
see Fig. 1), they are denoted with a 3p or 5p
sux. If relative expression levels of these opposite
strands are known, an asterisk (*) following the
miRNA denotes a miRNA expressed at low levels
relative to its opposite arm of the hairpin loop. It
is proposed that the use of the asterisk denomination be replaced by consistent use of the 3p or
5p sux (5).
Aims of the study
245
Kolshus et al.
Table 1. Clinical studies of miRNAs in schizophrenia
Author
Postmortem casecontrol brain studies
Burmistrova et al. (2007) (41)
Patients
Tissue
Analysis
Main
findings
Scz = 12
Controls = 12
Scz = 13
SA = 2
Controls = 21
Parietal
neocortex (BA 7)
PFC (BA 9)
Microarray
Microarray
qRT-PCR
Scz = 21
Controls = 21
Microarray
qRT-PCR
Scz = 35
BPAD = 35
Controls = 34
qRT-PCR
Scz = 20
Controls = 20
qRT-PCR
Scz = 35
BPAD = 35
Controls = 35
Microarray
qRT-PCR
Scz = 21/15
Controls = 21/15
(STG/DLPFC)
Microarray
qRT-PCR
Scz = 37
Controls = 37
Microarray
qRT-PCR
Scz = 35
BPAD = 35
Controls = 35
Scz = 30/11
Controls = 42/12
(PFC/parietal)
PFC (BA 9)
qRT-PCR
PFC/Parietal
cortex (BA 10)
qRT-PCR
Microarray
qRT-PCR
246
Scz = 35
BPAD = 31
Controls = 34
miR-30b downregulated in
PFC of female patients only
Target genes/gene pathways:
Glutamate receptors 3/5
mIR-132 downregulated
Target genes/gene pathways:
DNMT3, GATA2, DPYSL3, CREB,
ERK, p250GAP synaptic plasticity, LTP
Author
Patients
Tissue
Analysis
Main
findings
Scz = 37
Controls = 97
DLPFC
Microarray
qRT-PCR
miR-17 upregulated
Target genes/gene pathways: NPAS3
Scz = 90
Controls = 90
WBC
Microarray
qRT-PCR
Scz = 112
Controls = 76
PBMCs
Microarray
qRT-PCR
Scz = 115
Controls = 40
Serum
Deep
sequencing
qRT-PCR
Scz = 840
Controls = 1476
DNA (blood)
miR-SNP
Scz = 193
Controls = 191
DNA
miR-SNP
Scz = 92
Controls = 74
DNA
Scz = 456
Controls = 453
DNA
GWAS and
quantitative
trait imaging
miR-SNP
Scz/SA = 1071
Controls = 1079
DNA
PGAS
Scz = 70
Controls = 176
DNA
miR-SNP
Scz = 17 791
Controls = 33 859
DNA
GWAS
Scz/SA = 617
Controls = 764
DNA
GoM
Genotyping studies
Hansen et al. (2007) (66)
miR-198, miR-206
Target genes/gene pathways:
CCND2, PTPN1, CREB5
let-7f-2, miR-18b, miR-505, miR-502,
miR-188, miR-660, miR-509-3
Targeted genes/gene pathways:
NGR1, DISC1, RGS4
miR-448, miR-218, miR-137 genes
were significantly enriched for association
Pre-miR-30e, miR-30e, miR-24 associated
with schizophrenia. miR-30e also showed
increased expression in PBMCs in Scz
Target genes/gene pathways: MAPK14,
NOTCH1, Ubc9
Six SNPs in CPLX2 gene were highly associated
with cognitive functioning in Scz
Target genes/gene pathways: presynaptic
regulatory proteins
SNPs in BDNF gene prevent binding of translational
repressors miR-26a/miR26-b, but are
not associated with Scz.
Target genes/gene pathways: BDNF
Strongest finding for Scz association in SNP
in miR-137. Four other significant loci contain
targets for miR-137
Target genes/gene pathways: adult neurogenesis,
neuronal maturation
SNP in miR-137 associated with cognitive deficits in
Scz patients with severe negative symptoms
247
Kolshus et al.
studies include individuals who have been treated
with these medications. Haloperidol was found to
upregulate the level of a set of miRNAs in rats
(45), and these were subsequently also found to be
upregulated in the cortex of haloperidol-treated
individuals with schizophrenia (47). Animal studies
have shown that a reduction in miR-219 mediates
schizophrenia-like eects of an NMDA (N-MethylD-aspartate) antagonist such as hyperlocomotion
and stereotypy (70). Antipsychotics prevented this
knockdown of miR-219 function. Of note, miR219 has been found to be upregulated in the
DLPFC of individuals with schizophrenia (47).
miRNAs and bipolar affective disorder
modest eect have been identied, such as CACNA1C, ANK3 and genes involved in circadian
rhythm (72, 73). However, as in schizophrenia, the
problematic issue of numerous genes of small eect
has led to a growing interest in transcriptional regulators such as miRNAs in BPAD. To date, miRNA studies in BPAD have been mostly limited to
postmortem studies, many of which included
schizophrenia subjects. Others have focused on the
impact of mood stabiliser treatment on miRNA
levels. The studies are summarised in Table 2.
Postmortem studies. The majority of these studies
used samples from the SMRI brain bank, which
included healthy controls as well as individuals
with a history of BPAD or schizophrenia. Several
of these studies found an overlap in miRNA levels
between BPAD and schizophrenia subjects (50,
51), but this did not survive correction for multiple
Author
Patients
Tissue
Scz = 35
BPAD = 35
Controls = 34
qRT-PCR
Scz = 35
BPAD = 35
Controls = 35
Microarray
qRT-PCR
Scz = 35
BPAD = 35
Controls = 35
PFC (BA 9)
qRT-PCR
Scz = 35
BPAD = 31
Controls = 34
Microarray
qRT-PCR
BPAD = 25
Controls = 21
Whole blood
qRT-PCR
Analysis
Main
findings
Non-significant reduction
in miR-346 levels in
patients with BPAD.
Significantdownregulation
of GRID1 gene
Target genes/gene pathways:
CSF2RA,GRID1, cytokine, glutamate
transmission
miR-504, miR-145/145*,
miR-22*, miR-133b, miR-154*,
miR-889 upregulated
miR-454*, miR-29a, miR-520c-3p,
miR-140-3p, miR-767-5p,
miR-874, miR-32, miR-573
downregulated
Targeted genes/gene pathways:
GRIN, DRD1, DLG3/4, ITPR1, CEP290,
HTT, SHANK3
miR-330, miR-33. miR-193b, miR-545,
miR-138, miR-151, miR-210,
miR-324.3p, miR-22, miR-425,
miR-181a, miR-106b, miR-193a,
miR-192, miR-301, miR-27b,
miR-148b, miR-338, miR-639,
miR-15a, miR-186, miR-99a,
miR-190, miR-339 downregulated
No significant differences in
BPAD group
248
SERT levels, which would result in increased serotonin signalling at the synapse. In addition,
miR-16 induced an adaptational change in locus
coeruleus neurons, from noradrenergic type to
serotonergic type in IC11 cells. The authors also
found that miR-16 could alter behaviour in depression models in mice. Following on from this study,
the same group examined the role of miR-16 in
hippocampal neurogenesis in mice (81). Although
uoxetine increases miR-16 maturation in the
raphe nuclei, it decreased miR-16 levels in the
locus coeruleus and hippocampus. These changes
were mediated by BDNF, Wnt2 and the prostaglandin 15d-PGJ2. Furthermore, in nine patients
with MDD, 12 weeks of uoxetine treatment led
to increased levels of these signalling molecules in
CSF. miR-16 was therefore placed as a micromanager of these changes (81). Apart from uoxetine,
the eect of paroxetine on human glioblastoma
astrocytoma cell lines has shown that miR-30 was
overexpressed following 6 and 12 h of incubation
(82).
Despite this early promising work, there have
been only a handful of clinical studies so far investigating the role of miRNAs in depression, and
these are summarised in Table 3.
Although the studies vary in their ndings, there
is preliminary evidence of a marked downregulation of numerous miRNAs in depression (83). In
contrast, antidepressant treatments have been
shown to be associated with an increase in the levels of several miRNAs (84, 85). Both miR-335 and
miR-494 levels were signicantly altered (in opposite directions) in suicide victims and escitalopram
responders. Interestingly, this postmortem study
also found evidence for the presence of correlated
networks of miRNAs in suicide victims compared
with controls. miRNAs in these networks were not
necessarily signicantly downregulated, but
formed highly signicant correlated pairs with
other miRNAs.
Two studies have characterised miRNA proles
from peripheral blood (84, 85). The rst study utilised peripheral blood samples from a small sample
of 10 patients, all of whom were responders to
escitalopram (84). Following 12 weeks of escitalopram, 28 miRNAs were signicantly upregulated
and two downregulated compared with drug-free
baseline levels. Many of these miRNAs are important gene expression regulators in the brain and
have been implicated in other psychiatric disorders. Of particular interest, miR-132 has repeatedly been identied as dysregulated in
schizophrenia (49, 50). miR-128 was upregulated
by both haloperidol and mood stabiliser treatment
in previous studies (45, 75) and was upregulated by
249
Kolshus et al.
Table 3. Clinical studies of miRNAs in depression
Author
Patients
Tissue
Main
findings
Analysis
PFC (BA 9)
qRT-PCR
CSF
qRT-PCR
MDD = 10
Whole
blood
qRT-PCR
Genotyping studies
Xu et al.
(2010) (86)
He et al.
(2012) (89)
MDD = 1088
Controls = 1102
MDD = 314
Controls = 252
DNA
miR-SNP
DNA
miR-SNP
Other studies
Belzeaux
et al. (2012) (85)
MDD = 9
Controls = 9
PBMCs
Microarray
qRT-PCR
Bocchio-Chiavetto
et al. (2012) (84)
escitalopram here (84). A recent study investigating transcriptional signatures at dierent time
points in a depressive episode found two miRNAs
upregulated at remission compared with healthy
controls (85). This was in a sample of nine patients,
who all responded to a range of antidepressant
treatments. Several mRNA candidates were also
identied that may have the potential to serve as
biomarkers in depression.
A number of studies have searched the human
genome for SNPs that may be associated with
depression. One such large study found a positive
association between miR-30 and MDD (86). This
was carried out in an ethnically homogenous Han
Chinese population, in which an earlier study had
found SNPs in miR-30 to be associated with
schizophrenia (67). Depression has been linked
with disruption to circadian rhythms, and sleep
disturbance is a key symptom in aective disorders
(87). A SNP in miR-182 was found to be associated with late insomnia in patients with MDD.
Patients with this SNP had downregulated expression of genes linked to circadian rhythm like Clock
250
Discussion
Author
Genotyping studies
Muinos-Gimeno et al. (2009) (99)
Patients
Tissue
Analysis
OCD = 153
PD = 212
Controls = 324
DNA
miR-SNP
PD = 626
DNA
miR-SNP
AD = 14
Controls = 13
Prefrontal
cortex
Microarray
qRT-PCR
Main
findings
AD, alcohol dependence disorder; OCD, obsessivecompulsive disorder; PD, panic disorder; qRT-PCR, quantitative reverse-transcriptase polymerase chain reaction; SNP, single
nucleotide polymorphisms.
251
Kolshus et al.
is not yet clear whether changes in miRNA levels
are due to global or individual expression changes.
Nonetheless, some miRNAs have been repeatedly
identied across several studies of schizophrenia,
including in dierent tissues and patient cohorts,
and these are worth further investigation and replication. The miR-15 family, targeting genes
implicated in schizophrenia such as BDNF, DRD1,
NRG1 and EGR3, was upregulated in the frontal
cortex in three separate studies (42, 47, 48).
Genotyping studies have identied variations in
miR-137 as strongly associated with schizophrenia
(5962). Other miRNAs of interest include miR132, miR-30 and miR-219. Treatment with other
antipsychotics also needs to be examined, including highly eective treatments such as clozapine.
The majority of studies of miRNA expression in
BPAD (see Table 2), although from a single brain
bank, remain contradictory. There is an overlap
with miRNAs implicated in schizophrenia. miRNAs also appear to be making a contribution to
the actions of lithium and sodium valproate, and
studies replicating these ndings as well as on other
mood-stabilising treatments are indicated. Further
analyses of miRNA changes in the dierent mood
states of BPAD and unipolar depression are
required to discriminate between trait and state
eects.
There are only a handful of studies investigating
miRNAs in depression (see Table 3). A combination of preclinical and clinical research has
revealed information on critical role of miR-16 on
the mechanism of action of uoxetine, including a
possible mechanism for its delayed onset of action
(80, 81). miRNA proling studies have found preliminary evidence for an upregulation of a number
of miRNAs in patients treated with antidepressants. Additional miRNA proling studies in larger well-characterised cohorts are required.
Additionally, studies that examine the eect of
powerful antidepressant treatments such as electroconvulsive therapy (ECT) would be helpful to
identify relevant miRNAs that have a role in either
the mechanism of antidepressant action or the neurobiology of depression itself.
Work in the area of anxiety disorders (Table 4)
is at a preliminary level compared with schizophrenia and aective disorders. Additional studies of
the whole spectrum of anxiety disorders are
needed, as well as studies designed to characterise
the eects of anxiety treatments on miRNA levels.
Overall, studies in new, larger and well-phenotyped cohorts are required as some of the ndings
to date are contradictory. For example, dierent
authors have found varying results using the same
samples from the Stanley brain bank (44, 4951).
252
Declaration of interest
None.
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