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GROUP
PROGRAM
LAB NO./TITLE OF EXPERIMENT
: 6
: EH2425E
: INVESTIGATION ON ENZYME ACTIVITY AND KINETICS
DATE PERFORMED
DATE OF SUBMISSION
LECTURER
: 29 SEPTEMBER 2015
: 13 OCTOBER 2015
: PN SUHAILA BINTI MOHD SAUID
No.
1
Content
Abstract
Allocated Marks
5
Introduction
Aims/Objectives
Theory
10
Apparatus
Methodology/Procedure
10
Results
10
Calculations
10
Discussion
20
10 Conclusion
10
11 Recommendation
12 Reference/Appendices
TOTAL
Marks Obtained
100
Remarks:
1
Checked by:
Date:
............
(PN SUHAILA BINTI MOHD SAUID)
1.0
ABSTRACT
Table of Contents
NO.
1.0
2.0
3.0
4.0
TITLE
Abstract
Introduction
Objectives
Theory
5.0
6.0
7.0
8.0
9.0
10.0
11.0
12.0
Apparatus
Methodology
Result
Calculation
Discussion
Conclusion
Recommendation
Reference/Appendices
PAGES
2
4
5
5
10
11
13
17
19
20
21
21
2.0
INTRODUCTION
Enzymes are protein molecules composed of amino acids and are manufactured by the
living cell and these molecules provide energy for the organism by catalyzing various
biochemical reactions ( Dr. Eby, 2003 ). If enzymes were not present in cells, most of the
chemical reactions would not proceed at measurable rates at the temperatures of living
systems. Each enzyme has at least a single active site which is the location where the
enzyme binds to the substrate. According to Dr. Eby 2003, in this way the substrate is held
rigidly in the most favorable orientation. Within the active site there are various chemical
groups that are involved in the reaction.
Enzyme activity is an enzymatic reaction which is the conversion of one molecule
into another. Enzyme activity involves a chemical reaction which catalyzed at the reactive
sites on the enzyme. Many parameters will affect the rate of this catalytic activity considering
as the complex nature of the enzyme. Enzyme activity can be influenced by pH,
temperature, substrate concentration and other factors. While, Enzyme kinetics is the study
of the chemical reactions that are catalyzed by enzymes. In enzyme kinetics, the reaction
rate is measured and the effects of varying the conditions of the reaction are investigated.
Studying an enzyme's kinetics in this way can reveal the catalytic mechanism of this
enzyme, its role in metabolism, how its activity is controlled, and how a drug or an agonist
might inhibit the enzyme.
This experiment is about to investigate the relation of enzyme activity and enzyme
kinetics with changes in enzyme concentration. The enzyme used in this experiment is
amylase. This enzyme usually found in saliva and germinating seeds. Amylase is an enzyme
that catalyzes the hydrolysis which is splitting of a compound like starch by addition of a
water molecule of starch into smaller carbohydrate molecules such as maltose, a molecule
composed of two glucose molecules. There are two categories of amylases which are alpha
and beta and these two differ in the way they attack the bonds of the starch molecules. In
this experiment, Amylase breakdown starch into maltose :
The hydrolysis of starch can be measured through the use of an enzyme test or
assay. An enzyme assay will test for the simple presence of enzyme activity but can also be
used to measure the reaction rate of an enzyme-catalyzed reaction. The assay can measure
either the appearance of one of the products or the disappearance of one of the substrates
over time.
3.0
OBJECTIVES
To determine the effects of temperature on the enzymatic activity and the changes in
of an enzyme.
To study the estimation of Michaelis-Menten parameters, effect of pH and
temperature on the enzyme activity and kinetics of inhibition.
4.0
THEORY
Enzymes are protein molecules composed of small chains of amino acids and are
produce by the living cell. These molecules provide energy for the organism by
catalyzing various biochemical reactions. If enzymes were not present in cells,
most of the chemical reactions would not be able to take place at measurable
rates and at the temperatures of living systems. Each enzyme has at least a
single active site which is the location where the enzyme binds to the substrate.
In this way the substrate is held rigidly in the most favorable orientation. Within
the active site there are various chemical groups that are involved in the
reaction. It is important to remember that enzymatic reactions usually result in
the addition or removal of some molecule or radical such as H2O, -OH, -H, -NH2
( Dr. Eby, 2013 ) .
Each enzyme possesses a pH and a temperature optimum for its activity.
This optimum pH and temperature can be easily determined in the laboratory by
carrying out the reaction in buffers over a wide range of pH or conducting tests
at different temperatures. Enzymes demonstrate a rather high degree of
specificity with respect to their substrates (Hedstrom, 2010). The degree of
specificity varies from enzyme to enzyme: some enzymes carry out a reaction in
only one direction but some will catalyze a reaction in both forward and reverse
directions although usually at greatly different rates for example, hydrogenation
in addition to dehydrogenation. Some enzymes will accept only one or two
specific substrate molecules; others accept whole classes or subclasses of
molecules as substrates. This specificity is the basis for enzyme nomenclature:
according to the kind of reaction performed or, even more specifically, according
to the substrate acted upon.
In enzyme activity, pH can have an effect of the state of ionization of
acidic or basic amino acids. Acidic amino acids have carboxyl functional groups
in their side chains. according to James Nishiura (n.d), basic amino acids have
amine functional groups in their side chains. If the state of ionization of amino
acids in a protein is altered then the ionic bonds that help to determine the 3-D
shape of the protein can be altered. This can lead to altered protein recognition
or an enzyme might become inactive. Changes in pH may not only affect the
shape of an enzyme but it may also change the shape or charge properties of the
substrate so that either the substrate cannot bind to the active site or it cannot
undergo catalysis. In general enzyme have a pH optimum. However the optimum
is not the same for each enzyme.
6
depend on the [S] (vlab.amrita.edu, 2011). When we plot a graph with substrate
concentration on the X axis and corresponding velocity on Y axis. It can be
observed from the graph that as the concentration of the substrate increases,
there is a corresponding increase in the V0. However beyond
a particular
Eqn.1
In the next step, this ES complex is breaks down in to the free enzyme and the
reaction product P:
Eqn.2
Since the second step is the rate limiting step, the rate of overall reaction must
be proportional to the concentration of the ES that reacts in the second step. The
relationship between substrate concentration, [S] and Initial velocity of enzyme,
V0 (Figure 2) has the same general shape for most enzymes (it approaches a
rectangular hyperbola). This can be expressed algebraically by the MichaelisMenten equation. Based on their basic hypothesis that the rate limiting step in
enzymatic reactions is the breakdown of the ES complex to free enzyme and
product, Michaelis and Menten derived an equation which is;
Eqn.3
9
The necessary terms in this reaction are [S], V0, Vmax, and Km (Michaelis
constant),.All these terms can be measured experimentally. It is theorized that
when this maximum velocity had been reached, all of the available enzyme has
been converted to ES, the enzyme substrate complex. This point on the graph is
designated Vmax. Using this maximum velocity and equation 1 and 2. Michaelis
developed a set of mathematical expressions to calculate enzyme activity in
terms of reaction speed from measurable laboratory data (Worthington
Biochemical Coperation, 2015).
The linear representation of the Michaelis-Menten equation can be represented
by the Lineweaver-Burk plot, Eadie-Hofstee plot and Hanes plot. The Km and
vmax are determined from the intercepts at the x- and y-axis and the gradients
of the graphs respectively.
5.0
Apparatus
Beaker
Measuring cylinder
Cuvette
Label sticker
Schott bottle
Vortex mixer
Water bath
Spectrophotometer
Hotplate
Meterial/Reagent
Starch
DNSA Reagent
6.0
METHODOLOGY
1. Four gram of starch powder was measured and 50 mL of cold water was
measured using measuring cylinder.
2. Mixing was done in a 500 mL beaker on a hot plate and using a stirrer
3. 150 mL cold water was added later into beaker until the solution become
homogeneous.
11
4. All the test tubes were incubated in a 30C water bath for 10 minutes to
equilibriate the temperature.
5. Amylase solution were added into the test tubes with different pH.
6. The test tubes with different pH were placed again in the water bath for
another 10 minutes for hydrolysis reaction.
7. Four mL DNSA reagents were added into each different pH test tube to
stop the hydrolysis reaction.
8. The test tubes were placed in the boiling water for then minutes and
cooled at room temperature.
9. The absorbance is determined using spectrophotometer at 540 nm.
10.The result were recorded and analyzed by plotted a graph of enzyme
activity level vs pH.
1. Starch solutions with concentration of 0.5, 1.5, 2.0, 2.5 and 3.0%(w/v)
were prepared by serial dilution.
12
2. Each test tube were labelled with the different concentrations and filled
with respective starch concentration and 1 mL of pH 7 buffer.
3. Another five test tube were filled with 2 mL of amylase solution.
12.All the test tube were placed in the incubator for 5 minutes (to equilibrate
temperature), mixed with the amylase and incubate again for 10 minutes
for hydrolysis reaction, and was stopped by adding DNSA.Then, the test
tubes were put into the boiling water for 10 minutes and cooled at room
temperature.
13.The absorbance was determined using spectrophotometer at 540 nm.
14.The result were recorded and analyze by plotting a graph of enzyme
activity level vs starch concentration.
1. Standard solution of glucose at different concentration ranging from 0100mg/L were prepared by serial dilution. For example 25 g of glucose in
250 mL of water are at concentration 0.1 mg/L.
2. 1 mL of each glucose concentration were added in each test tube and
labelled.
3. 1 mL of DNSA reagent was mixed in each test tubes.
4. All the test tube were placed in the boiling water for 10 minutes before
being cooled at room temperature.
5. The absorbance was determined using spectrophotometer at 540 nm.
6. The result were recorded and analyze by plotted standard curve of
absorbance against glucose.
7.0
RESULTS
Absorbance value
0.378
0.668
0.801
1.224
2.052
13
1.5
Absorbance Value
1
0.5
0
0
200
400
600
800
1000 1200
5
6
7
8
9
Absorbance
Glucose
Glucose
Enzyme
reading
concentrati
released
activity, V
(nm)
on, X
(mol)
(mol/min)
2.68
5.17
2.625
2.546
2.35
(g/mL)
0.0015
0.0029
0.0015
0.0014
0.0013
8.2610-6
1.5910-5
8.0910-6
7.8510-6
7.2610-6
8.3310-7
1.5910-6
8.0910-7
7.8510-7
7.2610-7
14
0
0
0
0
0
0
0
0
0
0
4.5
5.5
6.5
7.5
8.5
9.5
pH
Absorbanc
Glucose
Glucose
Enzyme
ure (C)
e reading
concentrati
released
activity, V
(nm)
on, X
(mol)
(mol/min)
2.63
5.32
7.29
8.07
(g/mL)
0.0015
0.0030
0.0041
0.0045
8.3310-6
1.6710-5
2.2810-5
2.5010-5
8.3310-7
1.6710-6
2.2810-6
2.5010-6
30
40
50
60
15
0
0
0
0
25
30
35
40
45
50
55
60
65
Temperature (C)
Absorbanc
Glucose
Glucose
Enzyme
concentration
e reading
concentration,
released
activity, V
(%)
0.5
1.5
2.0
2.5
3.0
(nm)
4.06
3.39
3.26
2.66
2.18
X (g/mL)
0.0023
0.0019
0.0018
0.0015
0.0012
,S(mol)
12.27x10-6
10.55x10-6
9.991x10-6
8.326x10-6
6.661x10-6
(mol/min)
12.27x10-7
10.55x10-7
9.991x10-7
8.326x10-7
6.661x10-7
1/V
1/S
8.15105
9.48105
1.00105
1.20105
1.50105
2.00
0.67
0.50
0.40
0.33
16
6
4
2
0
0 0.5 1 1.5 2 2.5 3 3.5
Substrate concentration (%)
17
7
6
1/V
5
4
3
2
1
0
0.33 0.53 0.73 0.93 1.13 1.33 1.53 1.73 1.93 2.13
1/S
8.0
CALCULATION
Glucose Concentration.
From the equation of standard curve:
Y = 0.0018X
where; X = protein concentration and Y = absorbance reading. Therefore, to calculate
protein concentration,
18
X=
Y
0.0018
X=
4.06
0.0018
X=
2255.56 mg
L
1L
1000 mL
1 103
mili
X = 0.0023 g/mL
0.0023 g/mL
180.1559 g/mol
1mL
19
Double reciprocal;
1
V
Km
V max
1
S
1
+
V max
= 1.2327
= 3.8889
Km = (3.8889)(0.8112)
Km = 3.1548
9.0
DISCUSSION
Based on figure 7.1, the graph shows a glucose standard curve. This graph
is plotted in order to get the equation straight line of glucose standard curve.
From this experiment the equation of the glucose standard curve is y = 0.0018x.
Thus, the enzyme activity can be calculated. The enzyme used is
2mL of
10.0 CONCLUSION
As conclusion the enzyme activity of the enzyme are affected by temperature,
pH and the substrate concentration. The optimum activity of the amylase
enzyme is at pH 6, and for temperature optimum temperature cant be found in
this experiment. The optimum activity of the amylase enzyme is proportional to
the concentration of the substrate. However according the theory optimum
temperature and pH for amylase is at 37C and pH 7, respectively.
The kinetic of the amylase enzyme can be determine by using MichaelisMenten equation using line weaver graph to determine the Vmax and Km. The V
max and Km of the amylase enzyme ware found to be 0.8112 mol/min and 3.1548,
respectively.
From the experiment, it showed that the maximum activity of the amylase
enzyme are at pH 6.Thus the relationship between effect of pH and enzyme
activity can be observe and experimental objective achieve. However, the
relation between enzyme activity and 2 parameter of temperature and substrate
concentration fail to be obtain according to theory because error while
22
conducting experiment and incorrect data gain. Thus, this failure affecting the
Michaelis-Menten parameters even it is obtain but it is not as correct as it should be.
11.0 RECOMMENDATION
These are some recommendations that should be done while carrying out this experiment:
Carry out proper absorbance reading to avoid low regression value from the
calibration curve
Maintain correct water bath temperature by not huddling around it as it may cause
constant level and the Vmax and Km of the reaction can be determined.
Starch analysis method can be used to enhance the reaction process. It can be
12.0 REFERENCES
Dr. Eby Bassiri (2013), ENZYME KINETICS: THEORY. Molecular Biology of Life
Laboratory. Retrieved on 10 October 2015 from
http://www.sas.upenn.edu/LabManuals/biol123/Table_of_Contents_files/8dEnzymeKinetics-Theory.pdf
Chul-Won Park and Erik Zipp (2000). The effect of temberature and pH on
enzyme kinetic. Introduction to Biochemical Engineering. Retrieve on 10
October 2015 from http://www.rpi.edu/dept/chem-eng/BiotechEnviron/Projects00/temph/enzyme.html
Hedstrom Lizbeth (2010) Enzyme Specificity and Selectivity. In: eLS. John Wiley & Sons Ltd,
Chichester. http://www.els.net
James Nishiura (n.d). The effect of pH on enzyme activity. Retrieve on 10 October
2015 from
http://academic.brooklyn.cuny.edu/biology/bio4fv/page/ph_and_.htm
23
Rudeekulthamrong et. al., 2012. Kinetic inhibition of human salivary alphaamylase by a novel cellobiose-containing tetrasaccharide. epartment of
Biochemistry, Phramongkutklao College ofMedicine, Phramongkutklao Hospital,
Bangkok, Thailand.
vlab.amrita.edu, (2011). Effect of Substrate Concentration on Enzyme Kinetics.
Retrieved 10 October 2015, from vlab.amrita.edu/?
sub=3&brch=64&sim=1090&cnt=1
Worthington Biochemical Coperation, 2015. Introduction to Enzymes. Retrieve on
10 October 2015 from http://www.worthingtonbiochem.com/introbiochem/tempeffects.html
13.0 APPENDIX
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25
26
27
28