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Department of Microbiology, Faculty of Biological Sciences, Quaid-i-Azam University, Islamabad 45320, Pakistan
Department of Microbiology, Faculty of Natural Sciences, Shah Abdul Latif University, 66111 Khairpur Mirs, Sindh-Pakistan
Abstract
Oil contaminated sites are enriched source of microorganisms that produce a variety of surface active
amphiphilic compounds known as biosurfactants. Pseudomonas putida SOL-10 strain isolated from oil contaminated
soil of Fimkassar oil field, Chakwal, Pakistan, was identified by standard morphological, biochemical and 16S rRNA
sequence analysis methods. SOL-10 strain was initially screened for biosurfactant production using oil spreading
test and then manifestation of rhlB (rhamnolipid) gene was confirmed by PCR using gene-specific primers. Maximum
biosurfactant production in terms of surface tension (29.9 mN m-1) and emulsification index (E24, 73.45%), was
achieved when the strain was grown in MSM supplemented with yeast extract (1.5-2 %, w/v) and urea (0.1 %, w/v)
as carbon and nitrogen sources, respectively, and the physical parameters were adjusted at pH 7.0, temperature
30C, 150 rpm agitation speed. The biosurfactant emulsified various hydrocarbons tested, being more effective
against xylene and kerosene (85.19% and 70.59%, respectively). The crude biosurfactant also showed stability at
a wide range of temperature (25-80C), pH (1-9) and salt concentration (1-5%, w/v). The stability and hydrocarbon
emulsifying potential of the biosurfactant indicated its possible use as decent contender for future environmental
applications like biodegradation and bioremediation of organic pollutants.
Citation: Qazi MA, Malik ZA, Qureshi GD, Hameed A, Ahmed S (2013) Yeast Extract as the Most Preferable Substrate for Optimized Biosurfactant
Production by rhlB Gene Positive Pseudomonas putida SOL-10 Isolate. J Bioremed Biodeg 4: 204. doi:10.4172/2155-6199.1000204
Page 2 of 10
Result
Gram reaction
Motility
Sporulation
Capsulation
Starch hydrolysis
Lipid hydrolysis
Casein hydrolysis
Catalase
Oxidase
Indole
Citrate utilization
Lactose fermentation
Citation: Qazi MA, Malik ZA, Qureshi GD, Hameed A, Ahmed S (2013) Yeast Extract as the Most Preferable Substrate for Optimized Biosurfactant
Production by rhlB Gene Positive Pseudomonas putida SOL-10 Isolate. J Bioremed Biodeg 4: 204. doi:10.4172/2155-6199.1000204
Page 3 of 10
Analytical methods
The qualitative and quantitative analysis of biosurfactantscontaining cell-free supernatant (CFS) of culture broth was performed.
The samples were collected after every 24 h, centrifuged at 12,000 rpm
for 15 min at 4C prior to analysis. All the analyses were performed
in triplicates and the averages of the three were taken. The Oil
Displacement Activity (ODA) test was performed according to
Rodrigues et al. [30]. The CFS (20 L) was dropped on crude oil-film
over surface of 40 mL distilled water in 90 mm petri dish. The zone of
oil repellence was visualized and measured in millimeter (mm), quickly
after performing the assay. The percentage emulsification index (E24) of
the CFS and crude extract was determined according to the method of
Cooper and Goldenberg using Eq. 1 [31].
eHT
(1)
E24 (=
%)
100
tHT
Where eHT denotes the emulsion height and tHT indicates
total height of the solution. The heights were measured in terms of
centimeters (cm) in triplicates and the means were calculated.
The surface tension (SFT) of the cell-free broth, and crude
biosurfactant solution was measured with a digital tensiometer
(EasyDyne K20, KRUSS GmbH, Germany) using standard Whilmay
plate method at room temperature according to the manufacturers
instructions. All the measurements were taken as the mean of five
measurements in mN m-1 SD.
Primer sequence
Amplification
27F
5-AGAGTTTGATCMTGGCTCAG-3
1492R
5-TACGGYTACCTTGTTACGACTT-3
518F
5-CCAGCAGCCGCGGTAATACG-3
800R
5-TACCAGGGTATCTAATCC-3
Sequencing
Table 2: List of primers used in this study for amplification and sequencing of 16S
rRNA gene.
Citation: Qazi MA, Malik ZA, Qureshi GD, Hameed A, Ahmed S (2013) Yeast Extract as the Most Preferable Substrate for Optimized Biosurfactant
Production by rhlB Gene Positive Pseudomonas putida SOL-10 Isolate. J Bioremed Biodeg 4: 204. doi:10.4172/2155-6199.1000204
Page 4 of 10
Figure 1: Phylogenetic tree of Pseudomonas putida SOL-10 strain showing evolutionary relationship inferred by NJ method with 22 taxa.
J Bioremed Biodeg
ISSN: 2155-6199 JBRBD, an open access journal
Citation: Qazi MA, Malik ZA, Qureshi GD, Hameed A, Ahmed S (2013) Yeast Extract as the Most Preferable Substrate for Optimized Biosurfactant
Production by rhlB Gene Positive Pseudomonas putida SOL-10 Isolate. J Bioremed Biodeg 4: 204. doi:10.4172/2155-6199.1000204
Page 5 of 10
Figure 2: PCR amplified product of rhlB gene. Lane-1: 1 kb DNA marker, Lane-2: positive control, Lane-3: amplified product of rhlB gene of rhamnolipid positive isolate
P. putida SOL-10.
Figure 3: Effect of culture conditions on emulsifying activity and surface tension of culture broth in relation to biosurfactant production by P. putida SOL-10; A.
temperature, B. pH, C. agitation, D. carbon, E.nitrogen source, and F. yeast extract conc.
towards alkaline side (Figure 4). This is one of the reasons for growth
and biosurfactant production by P. putida SOL-10 strain when grown
at lower pH limits. The characteristic might in future be helpful in
J Bioremed Biodeg
ISSN: 2155-6199 JBRBD, an open access journal
application of the strain and the product in leather, paper, textile and
other industries working on variable pH ranges.
The cultivation broth showed maximum biosurfactant production
Citation: Qazi MA, Malik ZA, Qureshi GD, Hameed A, Ahmed S (2013) Yeast Extract as the Most Preferable Substrate for Optimized Biosurfactant
Production by rhlB Gene Positive Pseudomonas putida SOL-10 Isolate. J Bioremed Biodeg 4: 204. doi:10.4172/2155-6199.1000204
Page 6 of 10
at 150 rpm (E24, 72.73 1.5%; SFT, 30.42 0.2 mN m-1), while it remained
comparatively lower at 120 rpm and 200 rpm (E24, 50 2.4%; SFT, 32.66
0.5 mN m-1and E24, 55.23 2.2%; SFT, 33.2 0.9 mN m-1, respectively)
during 48 h. Similarly, fermentation experiments for biosurfactant
production by P. putida strains at vigorous shaking speed have also
been reported [40,46]. In the current study, the bacterial strain was
also found capable of producing biosurfactants under static condition
(0 rpm), giving an E24 of 40% after 48 h (Figure 3C). The absence of
agitation resulted in extended lag phase, short exponential and long
stationary phases (data not shown), which may be due the insufficient
oxygen level than normally required during the initial acclimatization
of the bacterium in growth medium. The higher agitation rate also
negatively influenced the biosurfactant production possibly due
to shear stress that would have resulted in detrimental effects on
biosurfactant yield and growth kinetics of the bacterium. Our findings
of optimum temperature, pH and agitation are somehow concurrent
with previous works on the production of biosurfactants by different
strains of P.putida that showed maximum production on 28C, pH 7.0
and 150 rpm [40,41,46]. The best results for rhamnolipids production
from Pseudomonas species have been reported with the addition of
either oils or residues rich in oils to the culture medium [29,47-49].
Subsequently, the effect of different carbon and nitrogen sources
was investigated (Figure3D-3F). Maximum biosurfactant production
was observed in the medium containing 1.5-2.5% (w/v) yeast extract
as carbon source (E24, ~72%; SFT, 29.95 mN m-1), however, varying
concentration of yeast extract was found to have little effect on the
biosurfactant production (Figure 3D and 3F). The strain demonstrated
biosurfactant production with all the nitrogen sources tested. Figure
3E is showing the effect of organic and inorganic nitrogen sources on
biosurfactant producing ability of P. putida SOL-10 isolate. The best
emulsifying activities (E24, 73%) were detected when urea and L-leucin
were used as nitrogen sources at a conc. of 0.1% (w/v) along with
yeast extract (conc. 1.5%, w/v), as compared to inorganic nitrogen
sources such as sodium nitrate, ammonium nitrate and potassium
nitrate at 30C, 150 rpm and pH 7.0, showing maximum biosurfactant
production. Likewise, none of the tested nitrogen sources displayed
detrimental effects on growth as well as the biosurfactant production,
which was really interesting. Although, the use of yeast extract resulted
in significant biosurfactant production (E24, 72.33 1.3%; SFT, 30.54 0.25
J Bioremed Biodeg
ISSN: 2155-6199 JBRBD, an open access journal
Citation: Qazi MA, Malik ZA, Qureshi GD, Hameed A, Ahmed S (2013) Yeast Extract as the Most Preferable Substrate for Optimized Biosurfactant
Production by rhlB Gene Positive Pseudomonas putida SOL-10 Isolate. J Bioremed Biodeg 4: 204. doi:10.4172/2155-6199.1000204
Page 7 of 10
cereus NK1 [2,29,58]. The results were also found in accordance with the
biosurfactant isolated from AlcanivoraxdieseloleiB-5 [59]. The stability
of biosurfactant in the present work over a wide range of environmental
conditions suggests that it maintains its activity at extreme conditions. A
variety of hydrophobic sources i.e., n-hexane, n-hexadecane, kerosene,
xylene, olive oil and mustard oil were evaluated in order to determine
the emulsifying capability of the biosurfactant produced by P. putida
SOL-10. Table 4 shows the statistical analysis of variance (ANNOVA)
of emulsifying ability for all the hydrophobic sources tested. The
results revealed that the biosurfactant has significantly higher (p<0.05)
emulsifying capability against xylene and kerosene (>85% and ~70%
respectively), as compared to other hydrophobic sources used (Figure
7).
The P. putida SOL-10 is a potential soil-borne, non-pathogenic
biosurfactant producing strain. The optimization results concluded
the selective behavior of the strain for biosurfactant production under
favorable conditions. The preference of selective carbon and nitrogen
sources at certain concentrations, as well as at specific environmental
conditions demonstrated the importance of optimization studies in
such cases. Although, yeast extract is mostly considered as nitrogen
source, it also has sufficient amount of carbon that served as sole
carbon and energy source for SOL-10 isolate during current study.
However, due to expensiveness of yeast extract, further investigations
Time
SFT SD1
CMD-1 SD2
CMD-2 SD
(h)
(mNm )
(mN m )
(mN m )
(mN m-1)
NC3
71.34 0.02
71.33 0.02
71.36 0.02
71.36 0.02
-1
-1
-1
CMD-3 SD
43.6 0.45
48.27 0.025
68.33 0.015
69.58 0.06
24
40.3 0.36
44.78 0.09
57.24 0.04
69.12 0.01
48
34.6 0.06
34.65 0.11
36.72 0.01
45.43 0.06
72
31 0.02
31.36 0.023
31.28 0.05
38.54 0.07
96
29.9 0.03
30.68 0.05
30.02 0.02
32.62 0.055
120
31.2 0.06
31.56 0.026
31.98 0.23
32.54 0.03
-1
Table 3: Relationship between surface tension and critical micelle dilution (CMD)
of the cell free broth of P. putida SOL-10 strain grown in MSM under optimized
culture conditions.
Citation: Qazi MA, Malik ZA, Qureshi GD, Hameed A, Ahmed S (2013) Yeast Extract as the Most Preferable Substrate for Optimized Biosurfactant
Production by rhlB Gene Positive Pseudomonas putida SOL-10 Isolate. J Bioremed Biodeg 4: 204. doi:10.4172/2155-6199.1000204
Page 8 of 10
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Figure 6: Stability of crude biosurfactant at varying pH (A), temperature (B)
and salt concentrations (C).
Source of Variation
SS
df
Between Hydrocarbons
5,665.88
Within Replicates
2,063.48
24
Total
7,729.36
29
MS
P-value
F crit
2.62
85.98
SS=Sum of square
5
Df=degree of freedom
6
MS=mean square
4
J Bioremed Biodeg
ISSN: 2155-6199 JBRBD, an open access journal
Citation: Qazi MA, Malik ZA, Qureshi GD, Hameed A, Ahmed S (2013) Yeast Extract as the Most Preferable Substrate for Optimized Biosurfactant
Production by rhlB Gene Positive Pseudomonas putida SOL-10 Isolate. J Bioremed Biodeg 4: 204. doi:10.4172/2155-6199.1000204
Page 9 of 10
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ISSN: 2155-6199 JBRBD, an open access journal
Citation: Qazi MA, Malik ZA, Qureshi GD, Hameed A, Ahmed S (2013) Yeast Extract as the Most Preferable Substrate for Optimized Biosurfactant
Production by rhlB Gene Positive Pseudomonas putida SOL-10 Isolate. J Bioremed Biodeg 4: 204. doi:10.4172/2155-6199.1000204
Page 10 of 10
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Special features:
Citation: Qazi MA, Malik ZA, Qureshi GD, Hameed A, Ahmed S (2013)
Yeast Extract as the Most Preferable Substrate for Optimized Biosurfactant
Production by rhlB Gene Positive Pseudomonas putida SOL-10 Isolate. J
Bioremed Biodeg 4: 204. doi:10.4172/2155-6199.1000204
J Bioremed Biodeg
ISSN: 2155-6199 JBRBD, an open access journal