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* Lipids
5. Supramolecular Complexes interaction among macromolecules (noncovalent bond)
- hydrogen bond
- ionic attractions
- van der Waals forces (specific distance)
- hydrophobic interactions
6. Organelles entities of considerable dimensions compared with the cell
itself
Membranes supramolecular assemblies define the boundaries of cells
(phospholipid bilayer)
- Not easily classified as supramolecular assemblies or organelles,
have properties of both
- Supramolecular in construction because they are complexes of
proteins & lipids maintained by noncovalent forces
o Hydrophobic interaction- barrier to the free passage of
inorganic ions and most other charged or polar compounds
hydrophobic tends to occupy inner portion of
enzyme (protein)
Presence of membrane: for proper organelle
function
Protein and lipid composition are
characterized by the organelles function
How do properties of biomolecules reflect their fitness to the living
condition:
two dipoles weakly attract each other, bringing the two nuclei
closer. As the two nuclei draw closer together, their electron clouds
begin to repel each other. At the point where the van der Waals
attraction exactly balances this repulsive force, the nuclei are said
to be in van der Waals contact. Each atom has a characteristic van
der Waals radius, a measure of how close that atom will allow
another to approach
negatively charged electron clouds fluctuate instantaneously in
time are attracted to positively charged nuclei and electrons of
nearby atoms
stable bonds have lower energies; nearer distance energy
increases (repulsion)
2. Hydrogen Bonds
-
3. Ionic Interactions
-
Chapter 2: Water
-
Properties of Water
Higher boiling point, melting point, heat of vaporization and surface tension
o Attractions bet. adjacent water mol that give liquid water great internal
cohesion
High intermolecular forces of attraction bet. H2O
Maximum density is found in liquid state, with negative volume of melting
(ice occupies more space than the liquid form solid form floats)
Permanent Dipoles two atoms in molecule have substantially diff.
electronegativity: One atom attracts electrons more than another, more
negative. While the other atom becomes more positive
Hydrogen bonding in water is key to its properties
o Each shares an electron pair with the central oxygen atom
H-O-H bond angle is 104.5 degree
Oxygen nucleus attracts electrons more strongly than hydrogen
nucleus (proton)
O is more electronegative sharing electrons of H and O
are unequal
o Result is two electric dipoles in water mol H bears
partial positive charge and O partial negative
charge
o Hydrogen Bond electrostatic attraction bet. oxygen atom and
hydrogen of diff mol.
4 hydrogen bonds in one H2O molecule
o H-bonding is cooperative: H2O mol serving as an H-bond donor
becomes a better H-bond acceptor
Solid form distanced, density lower
Liquid twist
Hydrogen bonding in ice: fixed in space and forms max 4 H bonds
creating regular crystal lattice
Solvent properties of water derive from its polar nature (universal solvent)
o Hydration shells surrounding ions
Water has high dielectric constant
- Ability to surround ions in dipole interactions and diminish + and
- attractions between the water molecules interacting with ions
o measure of how well substance separate ions attracted to each
other
Water forms H bonds with Polar solutes
- Readily form hydrogen bonds with polar functional groups (O, N and C)
- Has positive and negative partial ends
o Hydrogen acceptor with lone pairs (O, N, C)
o Donor lahat ng may H mabigay
Hydrophobic Interactions apparent affinity of nonpolar structures
- Strength of the interaction it results from the systems achieving
greatest thermodynamic stability by minimizing the number of
ordered water molecules required to surround hydrophobic portions of
solute molecules
- water molecules participate in as many H-bonded interactions with one
another as the temperature permits
- H-bonded water network rearranges toward formation of a local cage
like (clathrate) structure surrounding each insoluble solute molecule
o Attraction bet nonpolar solutes is an entropy-driven process due
to net decrease in order
Amphiphilic molecules both strongly polar and nonpolar groups
- Polar interacts with the solvent and tends to dissolve; non polar avoid
contact with water
o Micelle stable structures of amphipathic compounds in water
NP cluster together and P arranged to maximize their
interaction
Colligative Properties
- Presence of solute (dissolved substance) disturbs the structure of
liquid, thereby changing its properties depends on the solute
o Misbehave ang water localize place of order in water
CP influence of solute on water is reflected in a set of
char. Changes in behavior
o Solutes alter the colligative properties of aqueous solutions by
lowering effective concn of water
Freezing point depression molecules that collide with the crystal are
solute, not water
o FPD crystalline lattice more energy, low temperature to
separate
Freezing of water 0 degrees ; above 0 melt
Put salt (fpd) melt bc ipa low below 0 na ang
freezing
Boiling point elevation
o BP vapor pressure is equal to external force
o Change BP in more atmospheric pressure place
Vapor pressure lowering
o VP - Equal ratio escape of mol. of gas and liquid during
evaporation
Osmotic pressure effects
o pressure necessary to push water back through the membrane
at a rate exactly equaled by the water influx is the osmotic
pressure of the solution
o To minimize the osmotic pressure created by the contents of
their cytosol, cells tend to store substances such as amino acids
and sugars in polymeric form
o
Imposing local order on water molecules, solutes make it more difficult for water to
assume its crystalline lattice (freeze) or escape into the atmosphere (boil or
vaporize)
Buffer
Each acid has a characteristic tendency to lose its proton in an aqueous solution.
The stronger the acid, the greater its tendency to lose its proton. The tendency of
any acid (HA) to lose a proton and form its conjugate base (A-) is defined by the
equilibrium constant (Keq) for the reversible reaction:
HA
Ka equilibrium or dissociation constants
Ka -> pKa = use -log
Acid release proton or yield H+ hydrogen ion or hydronium ion H3O+ (low
pH)
Base yield hydroxyl ions (OH-) accepts protons or H+
pk/pKa- negative log of the ionization constant of acid (Ka)
o strong acids pk < 3 maraming na ionize
o strong ase pk > 9
ph negative log of hydrogen ion concn (H+)
o ph= pka = log base/acid
o represent H concn
Base- reacts with acid ; weak base maging water halos lahat
1. Bicarbonate Buffer
o Maintain a 20:1 ratio : HCO3- : H2CO3 (bicarbonate to carbonic
acid);
Respiratory Regulation
- Exhalation of CO2 provide O2 to cells and remove CO2
- Works on volatile acids
- Body ph adjusted by changing rate and depth of breathing
Ventilation rates & effect on ph balance
o Increased removal of CO2 and H2O
Renal Regulation
- Eliminate large amounts of fixed acid excrete base HCO3
- Conserve and produce bicarbonate ions
- Kidney fails, ph balance fails
- Only the kidneys can rid the body of acids generated by cellular
metabolism (nonvolatile or fixed acids), while also regulating blood
levels of alkaline substances and renewing chemical buffer
components
o Kidney can retain or excrete bicarbonate as needed
Importance:
- Every H+ buffered by HCO3 a bicarbonate ion is consumed -> HCO3+ H+
- To maintain capacity of the buffer system bicarbonate must be
regenerated
o Bicarbonate has equimolar amount of H+ formed from carbonic
acid and H2O
- HCO3- formation can continue if H+ are removed
o Process occurs in cells of the renal tubules H+ are secreted
into the urine and bicarbonates is generated in the body
Filtered through glomerulus- plasma and glomerular
filtrate have HCO3 concentration 4300 mmol of HCO3
filtered in 24 hrs
W/out re-generation of HCO3 acidosis state
o Carbonate dehydratase enzyme involved in renal
bicarbonate regeneartion
Formation of CO2 and H2O from carbonic acid in renal
tubular lumen
CO2 diffuses across luminal membrane into tubular cells
o Luminal side impermeable to bicarbonate ions
di maka cross directly ang bicarbonate carbonic acid convert CO2 &
H2O to cross
bicarbonate ions pass into the extracellular fluid and the hydrogen ions are secreted
back into the lumen in exchange for sodium ions which pass into the extracellular
fluid
Ammonia Buffer
o Chronic overproduction of acid
o produced by deamination of glutamine in renal tubular cells
glutaminase- catalyze the reaction
Allows increased ammonia production and hence increased hydrogen ion
excretion via ammonium ions: NH3 + H+ NH4+
Regulation of blood ph
- Lungs and kidneys important role
o Lungs through retention or elimination of CO2 by changing rate
and volume of ventilation
o Kidneys- excrete acid, primarily in the ammonium anion (NH4+)
and reclaiming HCO3- from the glomerular filtrate (and add it
back to the blood)
Buffering Systems and their buffers used
o Respiratory bicarbonate
o Blood bicarbonate, phosphate, protein
o Kidneys bicarbonate, phosphate, ammonia
Henderson-Hasselbalch Equation
-
1 Lungs
respiratory
- The ratio of HCO3- (salt) to H2CO3 ( acid) is normally 20:1
- Allows blood pH of 7.40
The pH falls (acidosis) as bicarbonate decreases in relation to
carbonic acid
The pH rises (alkalosis) as bicarbonate increases in relation to
carbonic acid
Problems with Buffer Systems
- Provide only temporary solution to acidbase imbalance
-
Respiratory Compensation
- Change in respiratory rate that helps stabilize ph of ECF
- Affects carbonic acid-bicarbonate buffer system
When Pco2 RISES, ph falls as addition of CO2 drives system to the right
(add H)
FALLS, ph rises as removal of CO2 drives system to the left (remove H)
Renal Mechanisms
- Secretes or absorbs H+ or HCO3
- Generating additional buffers
o Renal Compensation
Change rates of H+ and HCO3 secretion or reabsorption by
kidneys in response to changes in plasma ph
o Assist lungs by eliminating any CO2 that enters renal
tubules
o H+ secreted into tubular fluid:
o Proximal convoluted tubule (PCT)
o Distal convoluted tubule (DCT)
o Collecting system
Secretes H+
Activity of buffers in tubular fluid
Removal of CO2
Reabsorption of NaHCO3
Renal response:
-
H+ secretion declines
Tubule cells do not reclaim bicarbonates in tubular fluid
Collecting system transports HCO3 out into tubular fluid while
releasing strong acid (HCl) into peritubular fluid
circulating buffers
respiratory performance
renal function
2.Cardiovascular conditions:
-
heart failure
hypotension
Caused: hypoventilation
Metabolic Acidosis
o
Metabolic Alkalosis
o
Compensation:
Respiratory reduced RR
PCO2: 35 45 mm Hg
PO2: 80 110 mm Hg
Number One:
Determine if the patient is
demonstrating an acidotic (remember:
pH less than 7.35) or alkalotic (pH
greater than 7.45) condition.
Number Two: