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Javier Mendez Narvaez
Wilmar Bolivar
Boston University
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Calima, Fundacin para la Investigacin de la Biodiversidad y Conservacin en el Trpico. Carrera 67A # 33b16, Cali, Colombia.
Biology department, Boston University, 5 Cummington Mall, Boston, MA 02215, USA.
Biology Department, Grupo de Investigacin en Ecologa Animal, Universidad del Valle. A.A. 25360, Cali, Colombia.
Corresponding author. Email: javier0620@gmail.com
Abstract. The Andes Mountains of South America are considered one of the most biologically diverse and threatened areas in the world.
Habitat destruction in this area is among the most common causes of amphibian population declines and extinction, but few studies have
used complementary approaches to understand the interplay between habitat transformation and microhabitat use by amphibians. We
studied the anuran diversity in modified vegetation cover types in a cloud forest in the tropical Andes of Colombia in order to compare components of biological diversity and microhabitat preferences among forested and human-altered habitats. Secondary Forest and Riparian
Forest were the vegetation cover type with the highest local diversity, whereas the highest turnover was between the forested and humanaltered areas. The species in the assemblage showed specific microhabitat associations with the substrate and the vertical stratification, with
lower mean values of niche overlap between species pairs in forested area than in human altered areas. These results show how anthropic
intervention creates less favorable vegetation cover types for some species of anurans and the way in which preferences for a specific microhabitat could influence distribution in these vegetation cover type.
Keywords. Anthropic intervention; Anurans; Niche preferences; Species reduction.
Resumen. La Cordillera de los Andes en Amrica se considera una de las reas de mayor diversidad biolgica y ms amenazadas en el mundo.
La destruccin del hbitat en esta regin figura entre las causas ms comunes de declive poblacional y extincin en poblaciones anfibios. Sin
embargo, pocos estudios han usado aproximaciones complementarias para entender la interaccin entre la transformacin del hbitat y el
uso de microhbitat en anfibios. Nosotros estudiamos la diversidad de anuros en diferentes tipos de cobertura vegetal modificadas, en un
bosque de niebla en los Andes Tropicales de Colombia, con el fin de comparar diferentes componentes de la diversidad biolgica y seleccin
de microhbitat entre reas boscosas y con modificacin antropognica. El Bosque Secundario y el Bosque Ripario fueron el tipo de cobertura
vegetal con la mayor diversidad local de especies, mientras el mayor recambio fue entre reas boscosas y alteradas por el hombre. Las especies
en el ensamble mostraron asociaciones especificas con el sustrato y en su estratificacin vertical, con valores promedio de solapamiento de
nicho mas bajos entre pares de especies en reas boscosas comparadas con modificacin antropognica. Estos resultados evidencian como la
intervencin antropognica crea cobertura de bosques menos favorables para algunas especies de anuros y la forma en que las preferencias
de stos por un microhbitat especifico pueden influir en su distribucin en estas coberturas de vegetacin.
INTRODUCTION
Population declines and extinction of amphibian
species have been the center of extensive debate and research in the last decade (Stuart etal., 2004; 2008). Direct
and indirect impacts of human activities are considered
the main cause of this worldwide phenomenon (Alford
and Richards, 1999; Collins and Storfer, 2003; Pounds
etal., 2006). This effect is not geographically random and
has affected mainly Neotropical amphibian species (Stuart
etal., 2004). In Latin America, although some studies that
show the population declines in a geographic and taxonomic context, most have highlighted the negative impact
on particular amphibian families that inhabit high Andean ecosystems (Lips etal., 2005a,b; La Marca etal., 2005).
The high humidity, abundant water sources, and
geographic barriers in Andean ecosystems have favored
historically the presence and diversification of amphibians (Navas, 2003; 2006; Guarnizo etal., 2015), resulting
in the greatest diversity of amphibian species per area in
Submitted: 16 July 2015
Accepted: 04 March 2016
the world (Myers et al., 2000; Young et al., 2004; Hutter et al., 2013). In particular, Colombia attains one of
the most diverse anuran fauna in the world with ca.714
species (Lynch, 1998; Acosta-Galvis, 2000; Kattan etal.,
2004) and there are probably many more cryptic species
to describe (Kieswetter and Schneider, 2013; Guarnizo
etal., 2015). However, it also has the highest number of
threatened amphibian species (Angulo etal., 2006). The
most susceptible species are those distributed in Andean
forested habitats and Amazonian habitats, where both
the strongest processes of habitat destruction (Kattan
and lvarez, 1996; Cabrera etal., 2011; Rueda-Almonacid
etal., 2004) and the highest species richness (Lynch etal.,
1997; Kattan etal., 2004) have been reported. Additional
causes such as emergent pathogens and global climate
change (Pounds et al., 2006; Alford et al., 2007, Foden
etal. 2013) have also been considered to explain amphibian decline, but we are unaware of any studies that have
considered ecological aspects like niche differences and
components of biological diversity to explain it.
In order to study species assemblages, two approaches have been most commonly used: components of
biological diversity and ecological species niche. The first
has been used to understand the effect of habitat change
on assemblages (Whittaker, 1972; Moreno, 2001; Pineda
and Halffter, 2005; Pineda et al., 2005). Alpha diversity
(local diversity) is one of the most commonly used estimates, but it has been suggested that the study of beta
diversity (species turnover) across vegetation cover types
or localities allows a better understanding to determine
which factors define species assemblages: distance, environmental heterogeneity, or historical processes (Condit
et al., 2002; Halffter and Moreno, 2005). Species niche
partitioning has been used to understand how species diversity and composition change along environmental or
spatiotemporal gradients (Chase and Leibold, 2003). For
instance, resource partitioning among species has been
proposed to reduce competition and promote coexistence
within assemblages (Pianka, 1974; Schoener, 1974; Grant,
1986; Lossos etal., 1997; Farlow and Pianka, 2002). However, analyses have not explored how transformations of
vegetation cover type affect species association with specific microhabitats and change species composition and
diversity in the vegetation cover type.
The northern Andes of South America have several
heterogeneous landscapes combining forested and altered
areas where the negative effect of habitat transformation
on amphibian diversity (Gutirrez-Lamus et al., 2004;
Herrera etal., 2004; Garca etal., 2007, Mendez-Narvaez
2014) and specific association among species and their
vegetation cover type (Arroyo etal., 2003; Herrera-Montes etal., 2004; Cadavid etal., 2005; Garca etal., 2005;
Garca etal., 2007) have been demonstrated. However, to
our knowledge no studies have combined ecological approaches such as the components of biological diversity
and microhabitat use in order to understand the effect of
human activities on species diversity in altered landscapes.
Thus, this study attempted to study the species turnover
of anurans between altered and natural vegetation cover
types and evaluate their partitioning resources in the Cordillera de los Andes from Colombia. We hypothesized that
transformations of vegetation cover type have a negative
effect on amphibian alpha and beta diversity. We also hypothesized that niche partitioning and species preferences
differ between forested and human-altered areas.
MATERIALS AND METHODS
Study area and data collection
Amphibians were sampled at Reserva Forestal Protectora del Ro Bitaco and neighboring properties, Vereda
Chicoral, Municipality of La Cumbre, Valle del Cauca department, Colombia (0435N, 7704W, 17002100 m
Complementary Ecological Approaches to Understand Decreases in Frog Diversity in Altered Andean Ecosystems
Javier Mndez-Narvez, Wilmar BolvarG
Data analysis
We used abundance frequency data from each vegetation cover type to calculate two types of rarefaction
(sample-size- and coverage-based) and extrapolation
curves of Hill numbers (Chao etal., 2014). We used Hill
numbers of three orders (qD) using the following equation:
q
D=
i =1
Pi q
1 /(1 q )
D ( m) =
m
k =1
(k / m )q * f k (m )) 1 /(1q )
Oij = Okj =
P(ij ) P(ik )
P(ij ) P(ik )
2
B = 1
( [( Pi) ])
2
Complementary Ecological Approaches to Understand Decreases in Frog Diversity in Altered Andean Ecosystems
Javier Mndez-Narvez, Wilmar BolvarG
Table 1. Amphibian species composition and relative frequencies by vegetation cover type in forested and human-altered areas of the Cordillera
Occidental, Colombia.
Species
DENDROBATIDAE
Colostethus fraterdanieli (Silverstone, 1971)
HYLIDAE
Dendropsophus columbianus (Boettger, 1892)
CENTROLENIDAE
Nymphargus ignotus (Lynch, 1990)
Centrolene savagei (Ruiz-Carranza and Lynch, 1991)
STRABOMANTIDAE
Hypodactylus mantipus (Boulenger, 1908)
Pristimantis juanchoi (Lynch, 1996)
Pristimantis palmeri (Boulenger, 1912)
Pristimantis calcaratus (Boulenger, 1908)
Pristimantis orpacobates (Lynch, Ruiz-Carranza and Ardila-Robayo, 1994)
Pristimantis brevifrons (Lynch, 1981)
Pristimantis erythropleura (Boulenger, 1896)
Pristimantis platychilus (Lynch, 1996)
Pristimantis permixtus (Lynch, Ruiz-Carranza and Ardila-Robayo, 1994)
Pristimantiscf.boulengeri (Lynch, 1981)
Total records/habitat
Secondary
forest
Riparian
forest
Tea crop
Livestock
area
Total
records/
species
0.06
0.69
0.02
42
0
0
0.21
0.09
0
0
0
0
35
14
0.06
0.02
0.47
0.17
0.04
0.03
0.16
0
0.04
0.01
204
0
0.01
0.46
0.08
0.05
0
0.03
0.01
0
0
163
0
0
0.31
0
0
0
0
0
0
0
58
0
0
0.55
0
0
0
0.43
0
0
0
113
13
6
249
48
16
6
87
2
5
3
538
Figure1. Comparison of sample-size-based rarefaction (solid lines) and extrapolation (dashed curves) of anuran species diversity in four vegetation
cover types for Hill numbers of order (A)q=0, (B)q=1, and (C)q=2. The 95% confidence intervals were obtained by a bootstrap method based on 200
replicates. Reference samples are denoted by solid dots.
Complementary Ecological Approaches to Understand Decreases in Frog Diversity in Altered Andean Ecosystems
Javier Mndez-Narvez, Wilmar BolvarG
Figure 2. Sample coverage for rarefied samples (solid line) and extrapolated samples (dashed line) as a function of sample size for anuran
samples from four vegetation cover types. The 95% confidence intervals
were obtained by a bootstrap method based on 200 replicates. Reference
samples are denoted by solid dots.
Figure3. Comparison of coverage-based rarefaction (solid lines) and extrapolation (dashed lines) of anuran diversity in four vegetation cover types for
Hill numbers of order (A)q=0, (B)q=1, and (C)q=2. The 95% confidence intervals were obtained by a bootstrap method based on 200 replicates.
Complementary Ecological Approaches to Understand Decreases in Frog Diversity in Altered Andean Ecosystems
Javier Mndez-Narvez, Wilmar BolvarG
Table 2. Substrate, vertical stratification, and activity associations of the anuran assemble in forested and human-altered areas of the Cordillera
Occidental, Colombia. Significant association between a species and the substrate or vertical stratification is denoted by one asterisk(*) and between a
species and both categories by two asterisks(**). See Results for details. Substrate: leaf litter =Ll; leaves =L; branches =B; under rocks =Ur; grass =G;
and bare soil =Bs. Stratum: 0; I=150cm; II=51100cm; III=101150cm; IV=151200cm y V200cm. Activity: Diurnal =Di, Nocturnal =No.
Species
Pristimantis palmeri*
Pristimantis erythropleura*
Pristimantis brevifrons
Hypodactylus mantipus*
Pristimantis juanchoi
Pristimantis calcaratus*
Pristimantis orpacobates**
Pristimantis platychilus
Pristimantis permixtus
Pristimantiscf.boulengeri
Nymphargus ignotus*
Centrolene savagei*
Dendropsophus columbianus*
Colostethus fraterdanieli
Total
Ll
20
0
0
13
0
0
1
0
0
0
0
0
0
9
43
L
176
76
5
0
5
34
10
2
8
2
35
14
29
0
396
B
37
9
1
0
0
11
5
0
0
1
0
0
11
0
75
Substrate
Ur
G
0
4
0
2
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
2
0
0
0
8
Bs
12
0
0
0
1
3
0
0
0
0
0
0
0
0
16
0
30
0
0
13
1
3
1
0
0
0
0
0
2
9
59
I
63
29
0
0
1
6
4
0
1
0
0
0
10
0
114
II
73
27
0
0
1
12
1
0
3
2
10
0
10
0
139
Stratum
III
43
19
1
0
1
13
3
1
1
0
17
1
20
0
120
IV
33
11
3
0
0
11
4
1
1
0
8
8
0
0
81
V
7
1
2
0
2
3
3
0
1
1
0
5
0
0
25
Activity
Di
No
28
221
0
87
0
6
4
9
0
6
0
48
0
16
0
2
0
8
0
3
0
35
0
14
0
42
9
0
41
497
Figure4. Association between kind of habitat and substrate (Left) or vertical stratum (Right) in the anuran community.
Complementary Ecological Approaches to Understand Decreases in Frog Diversity in Altered Andean Ecosystems
Javier Mndez-Narvez, Wilmar BolvarG
Figure5. Resource overlapping in microhabitat use, for (A)substrate and (B)stratum among anuran species in four different vegetation cover types
showing the histogram of the simulated index values (blue bars), observed index value (red vertical line), and one- and two-tailed 95% confidence intervals (pairs of black vertical thin-dashed and thick-dashed lines, respectively) for Secondary Forest (SF), Riparian Forest (RF), Livestock Area (LA), and
Tea Crop (TC).
observed index and the mean of simulated index are farther in forested than in human-altered areas (Fig. 5A).
For stratum, the observed index of niche overlap fell into
the confidence interval for FI, RF and TC but not for LA
(Fig.5B). Observed and simulated values (in parenthesis)
of niche overlap for substrate were estimated to be lower
in SF and RF, 0.75 (0.22) and 0.71 (0.21) respectively,
than in TC and LA, 0.94 (0.26) and 0.78 (0.30) respectively. For stratum, observed values but not simulated for
niche overlap were estimated to be lower in SF and RF,
0.52 (0.53) and 0.38 (0.42) respectively, than in TC and
LA, 0.62 (0.45) and 0.89 (0.33). The niche breadth average was similar among vegetation cover types: P.palmeri
had the highest niche breadth, followed by P.erythropleura
and P.permixtus (Table3).
DISCUSSION
The species diversity was influenced by the vegetation cover type, with higher species richness in forestedareas than in human-altered areas. The highest species
Table3. Niche breadth values of the anuran species in each vegetation cover type and mean niche breadth value by vegetation cover type. An asterisk (*)
denotes absence of the species.
Species
Pristimantis palmeri
Pristimantis erythropleura
Pristimantis brevifrons
Hypodactylus mantipus
Pristimantis juanchoi
Pristimantis calcaratus
Pristimantis orpacobates
Pristimantis permixtus
Pristimantis platychilus
Nymphargus ignotus
Centrolene savagei
Colostethus fraterdanieli
Dendropsophus columbianus
Breadth
Secondary Forest
0.76
0.72
0.72
0.5
0.76
0.81
0.71
0.69
*
*
*
*
*
0.78
Riparian Forest
0.85
0.64
*
*
0.63
0.74
0.82
*
0.63
0.66
0.63
0.50
*
0.68
Tea Crop
0.68
*
*
*
*
*
*
*
*
*
*
*
0.77
0.72
Complementary Ecological Approaches to Understand Decreases in Frog Diversity in Altered Andean Ecosystems
Javier Mndez-Narvez, Wilmar BolvarG
Livestock Area
0.80
0.72
*
*
*
*
*
*
*
*
*
*
0.63
0.72
Mean Breadth/habitat
0.77
0.69
0.72
0.5
0.70
0.78
0.77
0.69
0.63
0.66
0.63
0.50
0.7
compared with the overall diversity (20%) than in forested areas (93%, Table1). Moreover, forested areas, despite
having attained high species complementarity (RF and
SF=62%), had several unique species, whereas in humanaltered areas D.columbianus was the only unique species,
which is a common species in open areas and tolerant to
processes of vegetation cover type transformations (Estupian and Galatti, 1999; Bolivar and Renjifo, 2004).
An important consequence of the vegetation cover
type transformation is the loss of essential microhabitat
for the survival and reproduction of individuals (RuedaAlmonacid et al., 2004). The interaction among species
and between them and their environment delimit the
species niche (Shmida and Wilson, 1985). Thus, species
association with specific microhabitats might also imply
an association with a particular vegetation cover type and
impact their survival. We had two sources of evidence to
support this hypothesis. First, we found a significant association between the use of particular substrates and
vertical stratification and the vegetation cover type. We
also found a significant association between some species
with either the substrate or vertical stratification.
Transformation of vegetation cover type has been
proposed to change microhabitat preferences in other vertebrates like reptiles (Luiselli, 2006; Luiselli etal., 2006)
and birds (Franzreb, 1983). It also has been suggested to
affect landscape diversity, with an inverse relationship
between the number of species in an assembly and the
degree of niche overlap (Pianka, 1974). Our results also
support this idea, since the human-altered areas had the
highest level of niche overlap with lower microhabitat
availability and species richness than forested areas.
Species with high niche breath are considered excellent to colonize or resist environmental transformations
(Heyer and Bellin, 1973; Swihart etal., 2002). Our results
supported this idea since Pristimantis palmeri and P.ery
trhopleura showed high niche breadth and were present
in both forested and human-altered areas. Nonetheless,
P.calcaratus, P.orpacobates, and P.brevifrons also showed
high values of niche breadth and were only distributed in
forested areas. Other niche dimensions such as diet, morphological and physiological characteristics, and specific
breeding sites might be important in resources partitioning among species (Toft, 1985; Heyer et al., 1990; Lima
and Magnusson, 1998; Muoz-Guerrero etal., 2007; Santos and Rossa-Feres, 2007; Vasconcelos and Rossa-Feres,
2008; Mndez-Narvaez etal., 2015).
In summary, this study showed the negative effect
of human vegetation cover type transformation of Andean ecosystems on local species richness, species turnover, and resource preferences by amphibians, using for
first time complementary ecological approaches such as
components of biological diversity and species niche preferences and overlap. The absence of several species in
human-altered vegetation cover types could be an effect
Complementary Ecological Approaches to Understand Decreases in Frog Diversity in Altered Andean Ecosystems
Javier Mndez-Narvez, Wilmar BolvarG
of the elimination of some microhabitats in these transformations. Thus, the inclusion of ecological information
like species microhabitat associations in surveys of species diversity can provide a better understanding of particular causes for the species loss from landscape changes.
In fact, the limited information of the natural history in
amphibians has made the assessment of the conservation
status of several species a major challenge (Rueda-Almonacid, 2004).
ACKNOWLEDGMENTS
We would like to thank the communal action board
of Chicoral, especially to Margot Albear, Don Jorge Albear, and their son Diego Albear, who provided accommodation in their house during the field work. We also thank
biologists Laura Tabares, Jhon Jairo Ospina, Jimmy Cabra, and Carim Lpez for their help during fieldwork, and
to Carolina Amorocho for comments in the manuscript
and improvement of English.
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Complementary Ecological Approaches to Understand Decreases in Frog Diversity in Altered Andean Ecosystems
Javier Mndez-Narvez, Wilmar BolvarG
Complementary Ecological Approaches to Understand Decreases in Frog Diversity in Altered Andean Ecosystems
Javier Mndez-Narvez, Wilmar BolvarG
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