Fatty Acid Molecules: A Role in Cell Signaling

By: James J. Neitzel, Ph.D. (The Evergreen State College) 2010 Nature Education
Citation: Neitzel, J. J. (2010) Fatty Acid Molecules: Fundamentals and Role in Signaling. Nature Education 3(9):57

Can eating fat be good for us? Some fatty acid molecules actually play a crucial role in maintaining our health and
cellular functions.

Plenty of news articles and advertisements all promote the beneficial effects of omega-3 and omega-6 fatty acids.
We know that fats provide caloric energy in our diet, but why should the particular kind of fat we eat make any
difference? Specific fatty acids are the starting material for many vital signal molecules in plants and animals.
Mammals cannot synthesize these fatty acid precursor molecules on their own, so a failure to obtain these fats
from the diet can have major negative consequences. How were these molecules discovered and what specific
features of their chemistry make them necessary? A fat-free diet for rats, hormonal secretions from the prostate
gland, aspirin, and innovative chemical syntheses, are all parts of this developing story that help us explain the
biological importance of these molecules.

What Happens When Fat is Removed from the Diet?

By the early twentieth century, scientists and doctors widely agreed on the basic set of vitamins needed for human
health. But what about other nutrients? Working at the University of Minnesota, Burr & Burr (1929) examined the
effect of fat-free diets on rats. They fed rats a diet containing sufficient calories, with protein and all of the known
vitamins, but without fat. The control group of rats was fed the same diet, but containing fat. They carefully
observed the health of the rats over several months. Over that time, the rats on the fat-free diet failed to thrive,
developed severe skin and kidney problems, and often died within weeks. Interestingly, they could return the sickly
animals to good health by adding some dietary fats, or small amounts of liver, back to their food, but many other
fats had no beneficial effect. Why were these animals sick? Burr & Burr proposed several hypotheses. Perhaps the
strain on the animals caused by synthesizing all of their own fats was the cause. Could there be a new fat-soluble
vitamin (vitamin F), which was needed for animal health? Or were there specific features of the fat itself that were
necessary? They knew that there are several kinds of fatty acids in the human diet, so they decided to answer
some of these questions by systematically feeding the sick animals a selection of known fats to see if any of them
had an effect (Figure 1). They eventually discovered that adding back two particular purified fatty acids, linolenic
and linoleic acids, restored the sick animals to health, while the other fatty acids were unable to do so (Burr & Burr
1932). This led to the recognitions of linolenic and linoleic acids as essential fatty acids.
Figure 1: A quick introduction to fatty acids (A) This is the structure of stearic acid, an 18-carbon saturated fatty
acid. The normal numbering system, starting with the carboxylic acid, is shown in blue. The carbons and oxygens of
the carboxylic acid functional group are red. (B) This is the structure of oleic acid, an 18-carbon unsaturated fat.
The carbons of the alkene functional group, the site of unsaturation, are in the rounded rectangle. Since there is
only one double bond, oleic acid is an example of a monounsaturated fatty acid. This also illustrates the omega
labeling system, with the numbers in blue indicating the number from omega-1, the carbon farthest from the
carboxylic acid group, to the first carbon of the double bond. Since the first carbon in a double bond is carbon 9,
oleic acid is an omega-9 fatty acid. (C) This is linoleic acid. To simplify larger molecules scientists often use line-
angle drawings. In these drawings, every line is a bond and every bend is a carbon atom. Most hydrogen atoms are
not shown, and it is assumed each carbon has enough hydrogens so that each carbon has four bonds. Since linoleic
acid has more than one double bond (it has two), it is a polyunsaturated fatty acid. The omega numbering system
has been applied to this molecule. Here, counting in from the omega end, the first double bond encountered is on
carbon 6, so this is an example of an omega-6 fatty acid.

Linolenic and Linoleic Acids: The Special Fats

What is so special about linolenic and linoleic acids? Are there specific structural features that these fatty acids
have that other fatty acids lack? When we compare the structures of fatty acids, it is not immediately obvious what
makes the difference (Figure 2). Linolenic and linoleic fatty acids contain long carbon chains of 18 carbons each,
but other fatty acids of similar size, such as steric acid and oleic acid, cannot replace them. These "essential" fatty
acids are polyunsaturated meaning they contain multiple carbon-carbon double bonds. Scientists have
determined that the key structural feature that makes these molecules different is the position of their double
bonds.
The position of these double bonds can be described in several ways. The most common is to begin numbering the
carbons from the carboxylic acid functional group, with that carbon labeled as carbon 1. Following this system,
linoleic acid has double bonds at the 9 and 12 positions, whereas linolenic acid has double bonds at the 9, 12, and
15 positions. An alternate numbering system using Greek letters is widely used to label the carbons starting from
the carbon farthest from the functional group which is defined as the (omega) 1 carbon. If we examine
linolenic acid, we see that the carbon-carbon double bond furthest from the carboxylic acid functional group is on
the third carbon from the omega end, so linolenic acid is an omega-3 fatty acid. Similarly, linoleic acid is an omega-
6 fatty acid.

Figure 2: The structure of the fatty acids

examined (A) These fats could not serve
as essential fatty acids. (B) These
polyunsaturated fats would return the
animals to good health.
What Does the Body Do with the Fats We Consume?

Through meticulous physiological experiments, scientists have tracked the metabolism of radioactively-labeled
fatty acids, and discovered that we have enzymes that can alter the structure of dietary fatty acids as needed.
These enzymes can add carbons, to increase the length of the fatty acid chain, or insert or delete carbon-carbon
double bonds. These conversions happen in the liver, brain and retina in our body. However, we are limited by the
enzymes we produce.
Our enzymes can only add new double bonds within 10 carbons of the carboxylic acid end of fatty acids, so we
cannot produce the carbon-carbon double bond at the omega-3 position of linolenic acid, or the double bond at
the omega-6 position of linoleic acid (Figure 2). It is the presence of these very crucial and specific double bonds
that allows these fatty acids to play important roles in our bodies. Any long chain omega-3 fatty acid has to
originate from an omega-3 fatty acid from our diet. Similarly, any omega-6 fatty acid had to arise from an omega-6
fat.
Some of these essential fatty acids, obtained in our diet, are converted into a 20-carbon fatty acid containing 4
carbon-carbon double bonds. This omega-6 fatty acid, arachidonic acid, is an important starting material for three
different types of signaling molecules (Figure 3). Similar research found pathways that converted fat from our diet
into the 22 carbon omega-3 fatty acid, docosahexaenoic acid (DHA). Identifying these different contributing
signaling molecules ultimately required work in multiple countries using a variety of experimental techniques.

Figure 3: Arachidonic acid, the key starting molecule for all eicosanoids. Arachidonic acid, the key starting molecule
for all eicosanoids

How Did Scientists Determine a Function for Fatty Acids?

In the 1930s, scientists in the United States and England indicated that human semen contained biologically active
material that could lead to uterine contractions, reduce blood pressure, and stimulate smooth muscle. Similarly,
Ulf Svante von Euler found a comparable substance in the prostate glands secretions of several mammals. When
examined in more detail, scientists found that this crude material was fat soluble, and acidic, and named it
prostaglandin. Was this active substance one molecule or a mixture of several molecules? Could it be purified
enough so that scientists could determine the exact molecular structure, and perhaps create stable forms useful in
treating disease?
A group of Swedish scientists tried to find the pure active form of prostaglandin, and by 1957 they had purified two
active compounds from the crude extracts. These experiments were amongst the first biological applications of
mass spectrometry and determined that these pure compounds had 20 carbon atoms.
When the Swedish scientists studied the structure of these purified molecules, they found that that these
molecules all contained double bonds located in roughly the same positions as the double bonds in the essential
polyunsaturated fatty acids (Figure 4). Was it possible that the essential fatty acids were the precursors to these
potent signaling molecules? The Swedish group contacted van Dorp in Holland, who had radioactively labeled
linoleic acid, and requested a sample of this material to add to their sheep gland extracts. Unknown to them, van
Dorp was planning on doing the same experiment, but graciously shared this material with the Swedish group. In
1964 the two groups separately, but simultaneously, conducted the experiment, and both groups found the same
result. When tissues that could produce prostaglandins were treated with radioactively labeled linoleic acid made
with radioactive carbon, they found that the radioactive carbon atoms appeared in the prostaglandins. What was
the interpretation of this observation? The fact that radioactive carbons initially present in the linoleic acid were
later showing up in the produced prostaglandins indicated that fatty acids were indeed the precursor molecules to
prostaglandins.
 Figure 4: Similarities between arachidonic
acid and prostaglandins

Scientists noted the similarities in size and

positions of double bonds between
arachidonic acid (top) and prostaglandins
(i.e., prostaglandin PGE2, bottom).

What Function Do Prostaglandins Play in the Body?

At this point these two separate lines of research merged, with the realization that the essential fatty acids earlier
recognized by Burr and others as key to animal health were the starting molecules used to produce the potent
prostaglandins. This later work was extremely challenging in two respects. First, the prostaglandins were extremely
potent in small quantities, with fractions of a milligram capable of changing human circulation. Second, they were
also very unstable and inactivated rapidly in biological systems. It was therefore very difficult to store
prostaglandins for long periods of time without them degrading into unusable forms.
Innovative work in organic chemistry, both in defining the structures of molecules using very small amounts, and
by synthesizing the proposed structures for these molecules in the lab, were important tools for understanding the
biological synthesis and breakdown of the prostaglandins. Synthetic chemists used the structures proposed for the
prostaglandins and synthesized large quantities of molecules that had those structures. For his work in designing
these challenging syntheses Elias Corey was awarded the Nobel Prize in Chemistry in 1990 (Corey 1990). Later,
scientists tested these synthetic prostaglandins in cells and animals and verified that they functioned like the
naturally occurring molecules, validating the proposed structures.
Another challenge in solving this puzzle was the enormous range of biological functions researchers found for
prostaglandins. These molecules promoted pain and inflammation, regulated pregnancy and child-birth, controlled
blood pressure and the secretion of stomach mucus and acid, contracted or relaxed smooth muscle. To make
matters even more confusing, some pairs of prostaglandins had actions that opposed each other.

What Else Does the Body Make from the Fatty Acids We Consume?
Prostaglandins were discovered first, but they are not the only signaling molecules synthesized from these
essential fatty acids. Thromboxanes, which regulate blood clotting, and leukotrienes, which are important in
immune function, are also synthesized using arachidonic acid as a precursor. These diverse signaling molecules
derived from essential fatty acids are referred to as eicosanoids eicos is the Greek root for 20 since they all
originated as 20-carbon fatty acids. Thromboxane, produced in platelets, constricts blood vessels and promotes
platelet aggregation, an early step in blood clotting. Leukotrienes attract immune cells (such as neutrophils) to sites
of inflammation, constrict bronchioles in the lungs, and make capillary walls permeable. (Samuelsson 1983). Some
medical treatments interfere with these actions, as a way to improve health. As a common example, inhalers that
are widely used for asthma treatment deliver the drug montelukast, which blocks the interaction between
leukotriene molecules and their receptors to inhibit this process.
What Aspirin Taught us About Prostaglandins
What first suggested to scientists that these varied biological molecules might all come from a common precursor?
The answer came from aspirin, a drug many people began using in the early 1900s. Although aspirin and a wide
range of other non-steroidal anti-inflammatory drugs (NSAIDs) have been used for decades, the biological basis of
their actions was not understood. It was not until the mid 1970s that scientists discovered that aspirin influenced
prostaglandin production to reduce pain and inflammation.

Figure 5: Two major biosynthesis pathways of eicosanoids: Lipo-oxygenase and Cyclo-oxygenase

A branching diagram shows the two main of biochemical pathways branching from arachidonic acid that lead to
eicosanoids. On the left is the lipo-oxygenase pathway (purple), which produces the eicosanoids called the
leukotrienes. On the right is the cyclo-oxygenase pathway, which leads to thromboxane and prostaglandins, via
COX enzymes. The widely-used drug montelukast acts on the leukotrienes. The drug aspirin interferes with COX
enzyme production.

Physicians observed that all these drugs had similar advantages as well as undesired side effects. They could relieve
pain and inflammation, but they also caused stomach ulcers and slowed blood clotting. Research by Jon Vane and
his lab indicated that aspirin blocked the synthesis of both prostaglandins and thromboxanes (Vane 1971, 1982).
This provided a logical explanation for aspirin's dual effect as both 1) a pain reliever and 2) an inhibitor of blood
clots. Cyclo-oygenase (COX) was the key enzyme that these drugs inhibited. Later, two forms of COX were
identified, and it was possible to selectively inhibit each of them. For a general summary overview, the major
branching pathways that lead from arachidonic acid to the eicosanoids are shown in Figure 5. Note that the COX
enzymes are positioned under one major branching pathway, the cyclo-oxygenase pathway. Next, we will
elaborate on this pathway.
What Systems Do These Signaling Molecules Activate?
The eicosenoids prostaglandins, thromboxanes, and leukotrienes are universally produced, and universally
active in the body. Virtually every type of cell (other than red blood cells) produces one or more of these signaling
molecules. Their very short half-lives means that they are very effective at signaling nearby cells, but fade fast
enough to not have global body effects. As these signaling molecules are so potent, their production is tightly
regulated.

What major molecules are involved? Normally, the precursor molecule arachidonic acid is stored as a component
of phospholipids on the cytoplasmic side of the plasma membrane. Specific phospholipase enzymes, such as
phospholipase A, cleave the arachidonic acid away from the phospholipid, which allows the COX enzymes to start
the conversion process. This cyclo-oxygenase pathway leads to a potential vairety of effects via the COX enzymes,
on many different tissues of the body (Figure 6).

Figure 6: A focus on the cyclo-oxygenase pathway.

The COX-1 and COX-2 enzymes activate a wide variety of effects in multiple tissues. COX-1 activates both
thromboxane and prostaglandins, while COX-2 activates prostaglandins only. Both have effects on blood vessel
constriction and dilation, as well as platelet aggregation. Drugs that act to interfere with the synthesis of COX
enzymes (steroids) or their action in tissues (aspirin) are often prescribed to reduce inflammation.

We have already mentioned some drugs that interfere with eicosanoids or their precursors, the COX enzymes. In
addition, steroid drugs have a general effect on eicosanoid activity becuase they act at the root of the major
branching pathways. These drugs function by blocking synthesis of the enzymes used to release these fatty acids
from the cell membrane, preventing the synthesis of prostaglandins. Steroid drugs are commonly used to combat
inflammation and are longer acting than other drugs mentioned here.
How do these molecules activate signaling pathways in their target cells? They bind to cell-surface proteins of the
seven-helix-G protein-coupled receptors (GPCRs). These in turn activate either the cyclic AMP pathway or the
inositol phosphate-calcium pathway. Altogether, these cascading pathways can produce both immediate and long-
term changes in their target cells.

How Are These Fatty Acids Involved in the Effects of Marijuana?

The same 20-carbon skeleton structural element continued to surprise researchers by appearing in other signaling
systems. Over ten years ago, researchers in Israel and the United Kingdom looked for the naturally occurring form
of tetrahydrocannabinol (THC), the active component of marijuana. They identified anandamide as the active
signaling molecule in the brain (Figure 7). The term "anandamide" was coined from the Sanskrit root "ananda",
meaning bliss (Devane et al. 1992). This molecule was also built from the vital 20-carbon molecule arachidonic acid,
mentioned above (Figure 4).

Figure 7. Anandamide

What is the Function of These Fatty Acid Derived Molecules in Non-Animal Life Forms?

These molecules have signaling functions in other species beyond the animal kingdom. Scientists have found a
number of small molecules that plants use as messengers. These molecules are synthesized when the plant is
stressed, say by bacterial or fungal infection, or by mechanical damage.

One such molecule is jasmonic acid and its volatile derivative, methyl jasmonate which are important
components of the plant's reaction to attack (Figure 8). Jasmonic acids are also made by starting with the carbon
skeleton of linolenic acid, in a pathway that is similar (but not identical) to the pathway that produces
prostaglandins in humans. (Turner et al. 2002) Plant cells exposed to jasmonic acid increase the production of
several antibacterial and antifungal proteins in their cells. In this case, plants have one important advantage over
animals as they contain the enzymes necessary to add the specific double bonds needed to produce linolenic,
arachidonic acid, and other long-chain polyunsaturated fatty acids. Unlike animals, however, plants synthesize all
of their essential molecules from carbon dioxide, minerals from soil, and sunlight. These observations do pose an
interesting question why were the same set of starting molecules, unsaturated fatty acids, chosen as the
starting point for signaling molecules in these widely divergent organisms?
Our Day-to-Day Diet How much of these fats do you need? Current recommendations suggest around 11.5g of
omega-3 fat (such as linoleic acid) and 1015g of omega-6 fats (such as linolenic acid) per day for adults (Food and
Nutrition Board 2002). Currently, there is a huge interest in the role of specific fats in human health, as they make
headline news nearly every day. Some of the most compelling hypotheses for how different types of dietary fat
could influence such diverse processes as asthma, cardiovascular disease, and brain development, suggest that
these diverse fats, from the long-chain unsaturated fats found in fish oil to the trans fats found in processed food,
work by altering these lipid based signaling systems. The amount and ratios of these fats in our diet could increase
or decrease the synthesis of prostaglandins, thromboxanes, and leukotrienes in our bodies. They could also
increase or decrease the effects of these signals on their normal target cells. The reactions that produce these
signaling molecules turn out to be those blocked by the action of drugs such as aspirin. Similar signaling molecules
derived from fatty acids are found in diverse organisms. How our diet influences these pathways, whether by
intake of trans fats or the ratio of omega-6 to omega-3 fatty acids, is currently the subject of great research
interest because of its possible impact on all aspects of human health, from the neural development of children to
cardiovascular disease in adults.

Figure 8. Jasmonic acid