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SPRING 2017
A thesis
submitted in partial fulfillment
of the requirements
for a baccalaureate degree
in Engineering Science
with honors in Mechanical Engineering
Tak-Sing Wong
Assistant Professor of Mechanical Engineering
Thesis Supervisor
Akhlesh Lakhtakia
Professor of Engineering Science and Mechanics
Honors Adviser
Judith A. Todd
Department Head
P.B. Breneman Chair and Professor of Engineering
Science and Mechanics
1
ABSTRACT
as they amplify the intensity of Raman scattering. Prior research even shows these biosensors
these are typically made using expensive and time-consuming techniques, such as electron-beam
lithography. My research aims to greatly reduce the manufacturing costs of SERS biosensors by
introducing a new nano-sphere lithography technique. These new sensors are made by depositing
a Self-Assembled Monolayer (SAM) of Polystyrene spheres on the surface of a silicon wafer and
then heat treating them, so that individual spheres will melt into neighboring spheres. This
melting into neighboring spheres will create an nonuniform density profile, which then allows
for different parts of the substrate to be etched at different rates. With careful control of heating
and the spheres removed, to create a P6mm pattern of nano-triangles which form the basis for the
biosensor.
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TABLE OF CONTENTS
ACKNOWLEDGEMENTS.........................................................................................iv
Chapter 1 Introduction.................................................................................................5
Chapter 2 Fabrication...................................................................................................9
3.2 Nano-triangles.9
Chapter 3 Materials......................................................................................................14
3.1 Chemicals...14
Chapter 4 Conclusion...................................................................................................15
BIBLIOGRAPHY........................................................................................................17
CURRICULUM VITAE...............................................................................................18
3
LIST OF FIGURES
Figure 1: The formation of bridges between different polystyrene spheres can be seen. These
areas have survived etching because of their higher densities.........................................10
Figure 2: (A) First the monolayer of polystyrene spheres is formed. (B) Next the spheres are
heated and they deform into eachother. (C) The spheres are etched and a small bridge will
form between the spheres. (D) Gold is deposited and the polystyrene spheres are removed. 11
Figure 3: The honeycomb pattern is formed from the polystyrene spheres. The empty space is
where the spheres originally resided...............................................................................12
Figure 4: This honeycomb template would allow us to create ~200 nm nano-particle s with a ~10
nm spacing......................................................................................................................13
Figure 5 : This shows how the templates that I produced did not have long range order. If I
wanted to create a useful template for SERS sensors, I would need to improve uniformity. 15
4
ACKNOWLEDGEMENTS
throughout most of my time at Penn State. Assistant Professor Tak-Sing Wong has nurtured my
curiosity for science since I became a sophomore at Penn State. He has allowed me to explore
my own ideas and pursue areas I found interesting, thus helping me become an independent
thinker. My mentor Dr. Shikuan Yang, now a faculty member at Zhejiang University, also
deserves my thanks. My thesis was built upon his previous work, and he also taught me several
techniques that I have used in this thesis and other research projects. Finally, I thank the Director
of the Millennium Scholars Program, Starlette Sharp, for providing me with the emotional
Chapter 1
Introduction
Raman spectroscopy is one of many spectroscopic techniques used to probe for details on the
properties and characteristics of materials. This spectroscopic technique is based off the
phenomena of inelastic Raman scattering where scattered light is either at a higher (Anti-Stokes)
or lower (Stokes) energy level1,2 than the incident light. The energy of the scattered light is
relationship
(1)
5
P= ~
aE cos ( 2 vt ) ,
where ~ a and v represent the polarizability of the material and the frequency of the
incident light
respectively.1,2
polarizability,
da (2)
Q cos ( 2 v vib t ) ;
dQ
da
P=~
a0
E cos (2 vt )+
E cos ( 2 vt ) Q cos ( 2 v vib t ) (3)
dQ
( 2 ( vv vib)t ) (4)
cos ( 2 (v + v vib )t ) cos
,
1 da
P =~
a0
E cos (2 vt )+ EQ
2 dQ
where Q is the normal coordinate of atoms/molecules away from their equilibrium position. The
Stokes and anti-Stokes scattering are represented by (v + v vib ) and ( vv vib ) , respectively.
Since the scattered electromagnetic radiation produced by the Raman phenomena contains
information about molecular vibrations and rotations, it shines light on the atomic composition of
the molecule, the chemical bonds between them, the crystal structure of the material, and the
Raman spectroscopy has been readily adopted into industry and academia for its versatility and
usefulness, whether it be for analysis of paper pulp or for the detection of a low concentration
solute. The techniques utility and appeal largely come from being non-destructive, usable in-
vitro for biological samples, and being implementable on with solids, liquids, and gases.24
6
electron cloud density which is stimulated by incident light. This induced oscillation allows for
an enhancement in the electric field, and the enhancement is the greatest when the plasmon
frequency, p, is in resonance with the incident light. This enhancement was discovered by
Fleischmann in 1973 when pyridine was adsorbed onto electrochemically roughened silver and
large Raman enhancements achieved. Though it was unknown to Fleischmann at the time, the
Raman enhancement occurred on his chemically roughened silver because the plasmon
oscillations were perpendicular to the surface. The oscillations were occurring between the
microstructures of the chemically roughened surface. With decades of research researchers have
come to understand that nanoscale metallic (noble metals) junctions are best for achieving high
I SERS ( v ) / N surf
E F SERS ( v )=
I NRS ( v ) / N vol
and was derived from experimental measurements. In this calculation the SERS-enhanced
Raman intensity, I SERS ( v ) , is normalized by the number of molecules binding to the metallic
substrate, N surf , and is then divided by the Raman intensity, I NRS ( v ) , which is normalized
by the number of molecules in the excitation volume, N vol .57 In this context, v is the
angular frequency corresponding to the exciting wavelength. This equation allows us to compare
and characterize different substrates with different electromagnetic properties and geometries. In
the past decade, research has helped us build an understanding of how different substrate
(5)
7
characteristics affect the enhancement factor.7 The research found that the enhancement factor
has a strong dependence on the dispersion behavior of plasmons, which in turn is dependent on
size, material composition, and shape of the SERS nanostructures. Furthermore, small and sharp
junctions have been shown to engender high enhancement factors. The difference in
enhancements between a 1-nm and 100-nm junctions can be as large as 3-4 orders of magnitude,
while the size of the particle itself has no effect on the actual EF.68 Knowledge in the field has
grown, however it is still impossible to accurately predict the behavior of a new substrate with a
new nano-particle geometry. This leads labs to having to experimentally determine the success or
SERS has been achieved using varying strategies, such as chemically synthesized nanostars,
electron-beam fabricated nanorods, and suspended nano-particles in solution.911 It has even been
possible to develop SERS with an ENHANCEMENT FACTOR high enough to detect single
molecules in solution.12,13 However, the enhancement factors in high-quality SERS typically are
between nano-particles on the order of several nanometers. 5,9 The high cost associated with
fabricating SERS devices prevents them from becoming standard instruments in hospital labs,
Thus, my thesis is focused on the development of a novel nano-sphere lithography technique for
lithography. It is my hope that my fabrication procedure will help in the development of low-cost
high-sensitivity SERS sensors. This thesis reports the batch fabrication of the common nano-
triangle geometry used in SERS, and it also demonstrates the fabrication of the previously
uncharacterized nano-honeycombs.
8
9
Chapter 2
Fabrication
First, a standard-size glass slide was functionalized via a low-power oxygen-etching procedure,
thus creating a hydrophilic surface. A thin layer of 2-m-diameter Polystyrene (PS) spheres was
pipetted onto the slide from solution. Since the slide was first functionalized, the solution quickly
spread evenly throughout the slide surface. While the solution dried on the surface of the slide, a
glass beaker was filled with pure water and lightly dusted with Sodium Dodecyl Sulfate.
After the polystyrene solution dried, the slide was carefully submerged in the beaker of water at
an angle of ~20 with respect to the horizontal. A monolayer of polystyrene spheres peeled off
onto the surface of the water. A silicon wafer, which had also been functionalized with low-
power oxygen was used to pick up the suspended polystyrene monolayer. After the solution has
dried, it will form a Self-Assembled Monolayer (SAM) on a small silicon wafer. A Langmuir-
Blodgett trough machine could have been used to make an SAM with more uniformity14, but my
3.2 Nano-triangles
The silicon wafer was then heated for 2 min at 110 C, which caused the spheres to deform
slowly over time. Eventually, the parts of the polystyrene spheres closest to neighboring
polystyrene spheres melted into each other. Upon cooling, they formed a high-density portion of
PS.15
10
The sample was etched inside a pressure-controlled chamber for 33 s at 100 mTorr. Since the
joined-sphere portions had higher mass densities then the rest of the sample, they etched at a
much slower rate. This difference in the etching rates allowed me to form the pattern seen in
Figure 1.
Figure 1: The formation of bridges between different polystyrene spheres could be seen. These areas survived etching
because of their higher densities.
Figure 1 shows the bridges formed between different polystyrene spheres as the main body of the
spheres was etched away. These bridges were formed because the interfaces between the spheres,
where they melted together, were denser than the main body of the spheres and were more
resistant to etching.
11
Gold was then deposited onto silicon wafer using a gold evaporator and the polystyrene spheres
were removed using acetone. This lift-off process allowed for the removal of excess gold, thus
revealing the P6mm pattern of gold nano-triangles on a sensing area on average ~20 nm wide
Figure 2: (A) First, the monolayer of polystyrene spheres was formed. (B) Next, the spheres were heated and they
deformed into each other. (C) The spheres were etched and a small bridge will form between the spheres. (D) Gold was
deposited and the polystyrene spheres were removed.
3.3 Nano-honeycombs
The silicon wafer was heated for 3 min at 110 C, which caused the spheres to deform slowly
over time. Since these polystyrene spheres were heating for a 50% longer duration than the
polystyrene spheres for the nano-triangles, each spheres perimeter would deform into the
12
The sample was then etched inside a chamber for 39 s at 100 mTorr. The prolonged etching time
Figure 3: The nano-honeycomb pattern was formed from the polystyrene spheres. The empty space was where the
spheres originally resided.
completely etched the sphere away, leaving behind an outline of each sphere. This difference in
the etching rates allowed me to form the honeycomb pattern shown in Figure 3.
This nano-honeycomb pattern allowed us to form metallic nano-honeycomb particles that are
average, as can be seen in Figure 4. Gold was then deposited on to the sample and the
polystyrene spheres were removed using acetone. This lift-off allowed for the removal of excess
gold, thus revealing the P6mm pattern of gold nano-triangles a ring-like sensing area on average
13
~10 nm. It would be interesting to investigate the functionality the nano-honeycomb substrate for
SERS, because it has not been studied before. I would have to experimentally determine whether
or not this design could generate an enhancement factor similar to that of high-performing SERS.
Figure 4: This nano-honeycomb template allowed the fabricating of ~200-nm-diameter nano-particle s with a ~10 nm
spacing.
14
Chapter 3
Materials
5.1 Chemicals
A 10% aqueous suspension of Sigma-Aldrich 200 nm Polystyrene Spheres was used for
fabricating the polystyrene self-assembled monolayer. The Sodium Dodecyl Sulfate used was
purchased from Sigma-Aldrich. The silicon wafers were purchased from the Penn State
Nanofabrication Labs.
5.2 Tools
The polystyrene SAM was etched on the silicon wafer using the Penn State Nanofabrication
Labs Plasma-Therm 720. The etcher was set to use pure O2 at 100 mTorr with a 10 V potential
difference inside the chamber. Also, the samples were imaged using the Leo 1530 Field Emission
Chapter 4
Conclusion
I demonstrated that it is possible, using only an etcher, to fabricate nanojunctions similar to those
functionality of a SERS sensor made with the conventional nano-triangle substrate16 and the new
Figure 5 : The templates produced did not have long-range order. Better uniformity is needed for SERS substrates.
creating affordable, high-quality SERS technology. I reliably recreated the desired patterns using
the physical constraints and equipment described; however, there were several short comings of
my investigation.
16
When developing the SAM, using the technique described in Chapter 2, I found that it is difficult
to fabricate a monolayer with high periodicity. I was not able to fabricate nanostructures with
high periodicity, that is, the substrates had breaks and open spaces like those seen in Figure 5.
Reproducibility of hot spots, where the Raman signal is intensified, is important for SERS-
sensing applications, which means that the substrate itself needs to have high periodicity. The
fabricated substrate failed to meet that standard. I suspect the reason that it was difficult to
construct a uniform, periodic SAM was because I was working with too small of a sphere i.e.
200-nm diameter. When I attempted to create an SAM with the same method, but with 0.5-4-m-
diameter polystyrene spheres, I created a uniform and periodic substrate. Since the batch
fabrication technique can be used to make small junctions capable of supporting hot spots, it
would be ideal to continue investigations with the use of a Langmiur-Blodgett trough capable of
producing uniform SAMs. If uniform substrates can be fabricated, the project to fabricate an
actual SERS sensor could progress towards completion. This sensor would be fabricated by
depositing gold onto the polystyrene substrate, removing the polystyrene with acetone, and
BIBLIOGRAPHY
1. Smith, E. & Dent, G. Modern Raman Spectroscopy - A Practical Approach. vol. 36.
Modern Raman Spectroscopy - A Practical Approach (2005). John Wiley and Sons Ltd,
Chichester doi:10.1002/0470011831
17
2. Hollas, J. M. Modern Spectroscopy, 4th Edition. John Wiley and Sons, Inc. New York,
3. Workman, J. J. Infrared and Raman Spectroscopy in paper and pulp analysis. Appl.
4. Eberhardt, K., Stiebing, C., Matthus, C., Schmitt, M. & Popp, J. Advantages and
limitations of Raman spectroscopy for molecular diagnostics: an update. Expert Rev. Mol.
5. Willets, K. A. & Van Duyne, R. P. localized surface plasmon resonance spectroscopy and
7. Stiles, P. L., Dieringer, J. A., Shah, N. C. & Van Duyne, R. P. Surface-enhanced raman
9. Lim, D.-K., Jeon, K.-S., Kim, H. M., Nam, J.-M. & Suh, Y. D. Nanogap-engineerable
10. Im, H., m, H., Bantz, K. C., Lee, S. H., Johnson, T. W., Haynes, C. L. & Oh, S.-H. Self-
assembled plasmonic nanoring cavity arrays for SERS and LSPR biosensing. Adv. Mater.
11. Kleinman, S. L., Sharma B., Blaber M., Henry A., Valley N., Freeman R., Natan M., &
surface-enhanced raman excitation spectroscopy. J. Am. Chem. Soc. 135, 301308 (2013).
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12. Patra, P. P., Chikkaraddy, R., Tripathi, R. P. N., Dasgupta, A. & Kumar, G. V. P.
13. Kneipp, K., Wang, Y., Kneipp, H., Perelman, L. T. & Itzkan, I. Single molecule detection
using surface-enhanced Raman scattering (SERS). Phys. Rev. Lett. 78, 16671670
(1997).
14. Lee, J. H., Kang, W. S., Choi, B. S., Choi, S. W. & Kim, J. H. Fabrication of carbon
11631167 (2008).
15. Ho, K., Kale, L. & Montgomery, S. Melt strength of linear low-density polyethylene/low-
16. Li, M., Cushing S., Liang H., Suri S., Ma D., & Wu N. Plasmonic nanorice antenna on
Victor Acero
730N Atherton Street State College, PA 16803 469-230-4192 victor.acero1@gmail.com
Education
Pennsylvania State University
Graduation: May 2017
B.S. Engineering Science,
GPA: 3.36
Research Experience
STANFORD UNIVERSITY, Palo Alto, CA Professor Bianxiao Cui
Undergraduate Intern 6/2016 08/2016
Project Title: Modulation of Light-Induced Homo Oligomerization of Cryptochrome2
Optogenetic methods seek to develop a platform allows precise control of protein-protein
interactions via light-sensitive proteins. Our method uses the light-activated dimerization of the
Cryptochrome2 (CRY2) protein and its binding partner CIBN and/or the light-activated homo-
oligomerization of CRY2 to induce protein-protein interactions. Because both CRY2 states exist
19
under light excitation there is poor control over the states, which significantly confounding
results and analysis. This work seeks to determine how fluorescence tags and bulky fusion
proteins may modulate homo-oligomerization.
Selected Accomplishments:
Showed that fluorescence proteins innate multimeric properties and bulky proteins can
impact CRY2 Homo-Oligomerization.
Learned how to do fluorescence microscopy and do image analysis.
PENNSYLVANIA STATE UNIVERSITY, State College, PA Professor Tak-Sing Wong
Undergraduate Intern 8/2015 Present
Project Title: Novel Batch Fabrication of Surface Plasmon Biosensors
Worked on optimizing the fabrication of surface plasmon biosensors using batch fabrication. After
depositing a monolayer PDMS film it will be heated to encourage binding at interfacial sites
between the spheres. The spheres are then etched to create a nano-triangle mask which can
allow for batch fabrication of nano-triangles usually made with electron beam lithography.
Selected Accomplishments:
Developed proof of concept for a gravity assisted water/oil separation construct that would
allow for a charged surface to force water and oil to separate as they were pumped through a
faucet
Wrote paper for the PSU College of Engineering Research Initiative
Selected Accomplishments:
Developed new sensor design to reduce electrical noise and improve signal to noise ratio of
past sensors.
Developed sensor that outperformed ELISA on time and a theoretically better detection limit.
Selected Accomplishments:
20
Developed first up to date list of the ECL/ABCL process, which is the process that determines
what equipment was approved to be sent to the ISS and which stage of approval it was on.
Created several schematic designs for an optimized process that reduced the number of
review points for a payload and could reduce process time.
Selected Accomplishments:
Developed blueprints for red force ideas and devices
Presented viability of ideas, assessed risk level, and method of deployment to Marine Corp.
supervisors.
Presentations and Publications
Modulation of Light-Induced Homo-Oligomerization of Cryptochrome2
Stanford Summer Research Program Convocation, Oral Presentation Award, August 2016
University of Pennsylvania: PhD Symposium, September 2016
Nature Chemical Biology (In Review, 2016): Understanding CRY2 interactions for optical
control of intracellular signaling
Enhancement of Graphene Biosensors for Cancer Detection
Annual Biomedical Research Conference for Minority Students, Best Poster Award,
November 2015
Penn State Science Fall Poster Session, October 2015
University of Minnesota Summer Poster Session, August 2015
National Nanotechnology Infrastructure Network: Symposium at Cornell University,
August 2015
Triboelectric Water and Oil Separation
Pennsylvania State University Engineering Spring Poster Session, April 2015
Extracurricular Activity
Millennium Society: President Penn State University, State College, PA 09/15 Present
Organized academic and social events for Millennium Scholars and facilitated mentorship
USA Science and Engineering Festival Washington, D.C. 04/2016
Spoke to +2000 attendants (children) about hydrophobicity, biomimicry, and Wong Lab
research
Guest Speaker for AP Students at Plano West Senior High School Dallas, TX 12/2013
Present
Provide guidance over how to be involved in research and find opportunities.
Tutor and Mentor at Atkins Elementary (Title 1 School) Dallas, TX 05/2013 Present
Helped students master fundamental mathematics and science, while promoting history
and literacy
21
Fencing PSU Division 1 Team 08/2013 08/2014, PSU Club 08/2014 Present
Fencing competitively throughout my high school and college career