Professional Documents
Culture Documents
Characteristics of Quinolone
Resistance in Salmonella spp.
Isolates from the Food Chain in Brazil
Bruno R. Pribul 1, 2*, Marcia L. Festivo 1 , Marcelle S. Rodrigues 1 , Renata G. Costa 1 ,
Elizabeth C. dos P. Rodrigues 1 , Miliane M. S. de Souza 2 and Dalia dos P. Rodrigues 1
1
National Reference Laboratory for Enteric Diseases, Oswaldo Cruz Institute(FIOCRUZ), Rio de Janeiro, Brazil, 2 Laboratory
of Veterinary Bacteriology, Federal Rural University of Rio de Janeiro, UFRRJ, Rio de Janeiro, Brazil
and multidrug resistance pumps such as oqxAB (Zhao et al., kit. The studied genes were detected by PCR amplification using
2010). PMQR-positive isolates present a low-level of resistance to primer sequences reported in Pribul et al. (2016). The qnrA,
quinolones (only a small reduction in susceptibility to nalidixic qnrB, and qnrS genes were amplified through multiplex PCR
acid). However, the ability to highlight pre-existing resistance reactions; the rrs gene was used as the reaction control. The qnrC,
mechanisms, such as chromosomal mutations in target regions qnrD, aac(6 )-Ib, integrase, and variable integron region genes
of quinolones that still allow the selection of resistant mutants were amplified by simplex PCR.
to quinolone concentrations (therapeutic doses), emphasize the
importance of studying these genes (Cui et al., 2014). PFGE
The present study identified the occurrence of some PMQR in The isolates from serovars S. Typhimurium, S. Muenchen,
Salmonella spp. isolated between 2009 and 2013 from the food S. Infantis, and S. Heidelberg were subjected to molecular typing
chain in Brazil, and characterized the genetic similarity profile of by pulsed-field gel electrophoresis, which clonally evaluates
serovars of greatest importance in the dispersion of resistance to isolates. The PulseNet protocol was used in this study including
quinolones in Brazil. DNA preparation according to Heir et al. (2000) and digestion
with XbaI restriction enzyme, according to Pfaller et al.
MATERIALS AND METHODS (1992), Tenover et al. (1997), and Cooper et al. (2006). The
definition of clones was based on the recommendations of
Bacterial Isolates Tenover et al. (1997) and Barrett et al. (2006). S. Braenderup
129 Salmonella spp. strains with resistance to quinolone and/or H9812, which is considered the universal strain for PulseNet
fluoroquinolone were evaluated. Of these, 51.9% (67/129) were (Hunter et al., 2005), was used as the standard. The restriction
from human clinical isolates, 30.2% (39/129) from food products patterns were analyzed in the BioNumerics software IV (Applied
for human consumption (beef, eggs, milk), 7.1% (9/129) from Maths).
Serovar Source IOC Pulsotype PMQRc Integron (bp) Resistance profile (MICb )
ID/Yeard
(Continued)
TABLE 2 | Continued
Serovar Source IOC Pulsotype PMQRc Integron (bp) Resistance profile (MICb )
ID/Yeard
a CIP, Ciprofloxacin; ENO, Enrofloxacin; NAL, Nalidixic cid; LVX, Levofloxacina; OFL, Ofloxacin; b MIC, Minimum Inhibitory Concentration; c PMQR, Plasmid-Mediated Quinolone
Resistance; d IOC ID/Year, Institut Oswaldo Cruz Identification by Year; e F, Food; A, Animal; E, Environment; H, Human.
900 bp and one with >1000 bp. One isolate shows the qnrB gene accordance with other results reported in the literature (Feasey
and, four show the aac(6 )-Ib gene. Two isolates show the 900 bp et al., 2012).
integron and the aac(6 )-Ib gene; one isolate shows the 900 bp
integron and the qnrB, acc(6 )-Ib gene. AUTHOR CONTRIBUTIONS
The profiles identified in the PFGE analysis show relatively
high diversity in all serovars and, indicate that cases of resistance All authors listed, have made substantial, direct and intellectual
to quinolones are probably sporadic. This interpretation is in contribution to the work, and approved it for publication.
REFERENCES Clinical and Laboratory Standards Institute (2014). Performance Standards for
Antimicrobial Disk Susceptibility Tests. Approved Standards. CLSI document
Barrett, T. J., Gerner-Smidt, P., and Swaminathan, B. (2006). Interpretation of M2-A3. Wayne, PA: Clinical and Laboratory Standards Institute.
pulsed-field gel electrophoresis patterns in foodborne disease investigations Clinical and Laboratory Standards Institute (2015). Performance Standards for
and surveillance. Foodborne Pathog. Dis. 3, 2031. doi: 10.1089/fpd.20 Antimicrobial Disk Susceptibility Tests. Approved Standards. CLSI document
06.3.20 M2-A3. Wayne, PA: Clinical and Laboratory Standards Institute.
Cavaco, L. M., and Aarestrup, F. M. (2009). Evaluation of quinolones for use Cooper, K. L., Luey, C. K., Bird, M., Terajima, J., Nair, G. B., Kam, K. M., et al.
in detection of determinants of acquired quinolone resistance, including the (2006). Development and validation of a PulseNet standardized pulsed-field
new transmissible resistance mechanisms qnrA, qnrB, qnrS, and aac(6 )Ib-cr, gel electrophoresis protocol for subtyping of Vibrio cholerae. Foodborne Pathog.
in Escherichia coli and Salmonella enterica and determinations of wild-type Dis. 3, 5158. doi: 10.1089/fpd.2006.3.51
distributions. J. Clin. Microbiol. 47, 27512758. doi: 10.1128/JCM.00456-09 Cui, S. F., Peng, L. P., Zhang, H. Z., Rasheed, S., Vijaya, K., Kumar, K., et al.
Chong, Y. P., Choi, S. H., and Kim, E. S. (2010). Bloodstream infections (2014). Novel hybrids of metronidazole and quinolones: synthesis, bioactive
caused by qnr-positive Enterobacteriaceae: clinical and microbiologic evaluation, cytotoxicity, preliminary antimicrobial mechanism and effect of
characteristics and outcomes. Diagn. Microbiol. Infect. Dis. 67, 7077. metal ions on their transportation by human serum albumin. Eur. J. Med.
doi: 10.1016/j.diagmicrobio.2009.12.003 Chem. 30, 318334. doi: 10.1016/j.ejmech.2014.08.063
Clinical and Laboratory Standards Institute (2013). Performance Standards for Dalhoff, A. (2012). Resistance surveillance studies: a multifaceted
Antimicrobial Disk Susceptibility Tests. Approved Standards. CLSI document problem - the fluoroquinolone example. Infection 40, 239262.
M2-A3. Wayne, PA: Clinical and Laboratory Standards Institute. doi: 10.1007/s15010-012-0257-2
Feasey, N. A., Dougan, G., Kingsley, R. A., Heyderman, R. S., and Gordon, Sanders, C. C. (2001). Mechanisms responsible for cross-resistance and
M. A. (2012). Invasive non-typhoidal Salmonella disease: an emerging dichotomous resistance among the quinolones. Clin. Infect. Dis. 32, S1S8.
and neglected tropical disease in Africa. Lancet 379, 24892499. doi: 10.1086/319369
doi: 10.1016/S0140-6736(11)61752-2 Scallan, E., Hoekstra, R. M., Angulo, F. J., Tauxe, R. V., Widdowson, M.
Heir, E., Linstedt, B. A., Vardund, T., Wasteson, Y., and Kapperud, G. (2000). A., Roy, S. L., et al. (2011). Foodborne illness acquired in the United
Genomic fingerprinting of shigatoxin-producing Escherichia coli (STEC) States: major pathogens. Emer. Infect. Dis. 17, 715. doi: 10.3201/eid1701.
strains: comparison of pulsed-field gel electrophoresis (PFGE) and fluorescent P11101
amplified-fragment-length polymorphism (FAFLP). Epidemiol. Infect. 125, Spiliopoulou, I., Zografou, S., Goula, A., Dimitracopoulos, G., and Christofidou,
537548. doi: 10.1017/S0950268800004908 M. (2007). Molecular epidemiology and antibiotic resistance patterns of
Herrero, A., Mendoza, M. C., Rodicio, R., and Rodicio, M. R. (2008). Salmonella enterica from outhwestern Greece. Chemotheraphy 53, 392396.
Characterization of pUO-StVR2, a virulence-resistance plasmid evolved from doi: 10.1159/000109768
the pSLT virulence plasmid of Salmonella enterica serovar typhimurium. Tamang, M. D., Nam, H. M., Kim, T. S., Jang, G. C., Jung, S. C., and Lim, S.
Antimicrob. Agents Chemother. 52, 45144517. doi: 10.1128/AAC.00563-08 K. (2011). Emergence of extended-spectrum beta-lactamase (CTX-M-15 and
Hunter, S. B., Vauterin, P., Lambert-Fair, M. A., Van Duyne, M. S., Kubota, K., CTX-M-14)-producing nontyphoid Salmonella with reduced susceptibility to
Graves, L., et al. (2005). Establishment of a universal size standard strain for ciprofloxacin among food animals and humans in Korea. J. Clin. Microbiol. 49,
use with the PulseNet standardized pulsed-field gel electrophoresis protocols: 26712675. doi: 10.1128/JCM.00754-11
converting the national databases to the new size standard. J. Clin. Microbiol. Tenover, F. C., Arbeit, R. D., and Goering, R. V. (1997). How to select
43, 10451050. doi: 10.1128/JCM.43.3.1045-1050.2005 and interpret molecular strain typing methods for epidemiological studies
Jacoby, G. A., Gacharna, N., Black, T. A., Miller, G. H., and Hooper, D. C. of bacterial infections: a review for healthcare epidemiologists. molecular
(2009). Temporal appearance of plasmid-mediated quinolone resistance genes. typing working group of the society for healthcare epidemiology of
Antimicrob. Agents Chemother. 53, 16651666. doi: 10.1128/AAC.01447-08 America. Infect. Control Hosp. Epidemiol. 18, 426439. doi: 10.2307/301
Kim, J. H., Cho, J. K., and Kim, K. S. (2013). Prevalence and 41252
characterization of plasmid-mediated quinolone resistance genes in Xiong, X., Bromley, E. H., Oelschlaeger, P., Woolfson, D. N., and Spencer,
Salmonella isolated from poultry in Korea. Avian Pathol. 42, 221229. J. (2011). Structural insights into quinolone antibiotic resistance mediated
doi: 10.1080/03079457.2013.779636 by pentapeptide repeat proteins: conserved surface loops direct the activity
Kingsley, R. A., Msefula, C. L., Thomson, N. R., Kariuki, S., Holt, K. E., Gordon, of a Qnr protein from a Gram-negative bacterium. Nucleic Acids Res. 39,
M. A., et al. (2009). Epidemic multiple drug resistant Salmonella Typhimurium 39173927. doi: 10.1093/nar/gkq1296
causing invasive disease in sub-Saharan Africa have a distinct genotype. Yamane, K., Wachino, J., Suzuki, S., Kimura, K., Shibata, N., Kato, H., et al. (2007).
Genome Res. 19, 22792287. doi: 10.1101/gr.091017.109 New plasmid-mediated fluoroquinolone efflux pump, QepA, found in an
Park, C. H., Robicsek, A., Jacoby, G. A., Sahm, D., and Hooper, D. C. Escherichia coli clinical isolate. Antimicrob. Agents Chemother. 51, 33543360.
(2006). Prevalence of aac(6 )-Ib-cr enconding a ciprofloxacin-modifying doi: 10.1128/AAC.00339-07
enzyme in the United States. Antimicrob. Agents Chemother. 50, 39533955. Yang, B., Qu, D., Zhang, X., Shen, J., Cui, S., Shi, Y., et al. (2010).
doi: 10.1128/AAC.00915-06 Prevalence and characterization of Salmonella serovars in retail meats
Pfaller, M. A., Hollis, R. J., and Sader, H. S. (1992). Chromosomal restriction of marketplace in Shaanxi, China. Int. J. Food Microbiol. 141, 6372.
fragment analysis by pulsed-field gel electrophoresis, in Clinical Microbiology doi: 10.1016/j.ijfoodmicro.2010.04.015
Procedures Handbook, ed H. D. Isenberg (Washington, DC: American Society Zhao, X., Xu, X., Zhu, D., Ye, X., and Wang, M. (2010). Decreased quinolone
for Microbiology), 10.5.c.1.10.5.c.12. susceptibility in high percentage of Enterobacter cloacae clinical isolates
Pribul, B. P., Festivo, M. L., de Souza, M. M., and Rodrigues Ddos, P. (2016). caused only by Qnr determinants. Diagn. Microbiol. Infect. Dis. 67, 110113.
Characterization of quinolone resistance in Salmonella spp. isolates from doi: 10.1016/j.diagmicrobio.2009.12.018
food products and human samples in Brazil. Braz. J. Microbiol. 47, 196201.
doi: 10.1016/j.bjm.2015.04.001 Conflict of Interest Statement: The authors declare that the research was
Robicsek, A., Sahm, D. F., Strahilevitz, J., Jacoby, G. A., and Hooper, D. conducted in the absence of any commercial or financial relationships that could
C. (2005). Broader distribution of plasmid-mediated quinolone resistance be construed as a potential conflict of interest.
in the United States. Antimicrob. Agents Chemother. 49, 30013003.
doi: 10.1128/AAC.49.7.3001-3003.2005 Copyright 2017 Pribul, Festivo, Rodrigues, Costa, Rodrigues, de Souza and
Rodrguez-Martnez, J. M., Cano, M. E., Velasco, C., Martnez-Martnez, L., and Rodrigues. This is an open-access article distributed under the terms of the Creative
Pascual, A. (2011). Plasmid-mediated quinolone resistance: an update. J. Infect. Commons Attribution License (CC BY). The use, distribution or reproduction in
Chemother. 17, 149182. doi: 10.1007/s10156-010-0120-2 other forums is permitted, provided the original author(s) or licensor are credited
Ruiz, J., Pons, M. J., and Gomes, C. (2012). Transferable mechanisms and that the original publication in this journal is cited, in accordance with accepted
of quinolone resistance. Int. J. Antimicrob. Ag. 40, 196203. academic practice. No use, distribution or reproduction is permitted which does not
doi: 10.1016/j.ijantimicag.2012.02.011 comply with these terms.