Professional Documents
Culture Documents
Density BP MP
Methylene Chloride 84.83 1.325 40
Chloroform 119.38 1.492 61
Carbon Tetrachloride 153.82 1.594 77 23
from "The Chemist's Companion," Gordon, A. J.; Ford, R. A.; Wiley: New York, 1972
-25
TC % o-xyl % p-xyl
-35
-30 83 17
-35 75 25
-45
-40 66 34
TC
-45 58 42
-55 -50 50 50
-55 42 58
-65
-60 33 67
-65 25 75
-70 17 83
-75
0.0 0.2 0.4 0.6 0.8 1.0
volume fraction of o-xylene
Figure 1. Cooling bath temperatures for mixtures of o- and p-xylene and dry ice
(from Phipps & Hume, J. Chem. Educ. 1968, 45, 664)
Alan M. Phipps
Boston College
Chestnut Hill, Massachusetts
General Purpose Low Temperature
and David N. Hume
Massachusetts Institute of Technoloqv
Dry-Ice Baths
Cambridge, Massachusetts 62139
- I
A great many methods have been de- is not useful since it forms a thick sludge at its melting
scribed for thc preparation and maintenance of low point ( - 2 6 T ) but mixtures of o- and m-xylene give low
temperature baths, and the field has been extensively viscosity baths with an approximately linear tempera-
reviewed recently.' Among the simpler techniques, the ture dependence on composition (see figure). Analyti-
liquid nitrogen-organic solvent slush bath has become cal grade acetonitrile gives a useful bath a t -4ZC,
increasingly popular and a compilation of 86 such baths while temperatures between -4ZC and -51C are
has been published by R ~ n d e a u . ~ obtainable with acetonitrile containing 0-3% acrylo-
We have found it convenient to employ an even nitrile. Technical grade acetouitrile was found to give
simpler bath composed of solid carbon dioxide and a reproducible bath at -46'C. Some mixtures do not
organic solvents or solvent mixtures having a freezing give baths in which the temperature varies normally
point above -7SC. Solid lumps of dry ice in a with composition. Mixtures of 3-hept,anone or cyclo-
Dewar flask containing one of several solvent systems hexanone with acetone act as if they were acetone-dry
afford a bath of rcasonahly uniform temperature and ice baths containing the solidified higher-melting ketone.
low viscosity. Such a bath is not, of course, a system a t A similar result ensues for mixtures of n-octane and
equilibrium; a layer of solid solvent appears to form iso-octane.
over the dry ice and a steady state is obtained with Because of the simplicity of the technique, the easy
slow evolution of gaseous CO1. The baths are generally availability of dry ice and its low cost, and the readiness
reproducible to + 1C if they are agitated intermittantly with which a desired temperature may be obtained, the
and if only a small excess of dry ice is used (e.g., 2 4 cc use of dry ice baths is worth consideration even where
per 200 ml in a standard 265 ml (one pint) Dewar flask). equipment for handling liquid nitrogen is available.
Many of the solvents cited by Rondeau may be em- This work was supported in part through funds pro-
ployed, although the bath temperature is not always vided by the U.S. Atomic Energy Commission under
the melting point of the solvent. Carbon tetrachlo- Contract AT(30-1)-905.
ride (-23"C), 3-hcptanone (-3S0C), cyclohexanone
(-46C) and chloroform (-61C) provide reproducible
low viscosity baths at the temperature indicated.
Many solvents which have appropriate melting
points may be unsatisfactory because they solidify, or
becon~ehighly viscous at low temperatures (c.g., n-
octane, alcohols) or are noxious. Certain solvents,
however, when mixed in the right proportions provide a
considerable range of stable bath temperatures together
with low viscosity. Of especial interest to this labora-
tory has been the attainment of temperatures through-
out the liquid range of ammonia (-78' to -33"C), and
we have fonnd that most of this range can be covered
with mixtures of ovtho and nzeta-xylene. Pure o-xylene
-80
NABSLER, J., "Experimental Techniques for Low Boiling Sol- 0 0.2 0.4 0.6 0.8
vents," Academic Press, New York, N . Y . , 1966, "Vol. I.- Volume Froction of 0-rylene
The Chemistry of Non-Aqueous Solvents," (Editor: J. J. LAG-
OWSKI), p. 213.
RONDBAU, R. E., 3. Chem. and Eng. Data, 11,124 (1966). Stecldy stole temperature of dry-ice--xylene, m-xylem mixtvro~.
Slush Baths
R. E. RONDEAU
The preparation of constant temperature slush baths is described and 86 common slush baths are
tabulated in order of decreasing temperature from 1 3 to -160 C. Some experimental applica-
tions of these cooling agents are also described.
THE
ACCOMPANYING TABLE lists 86 common solvents
and their slush bath temperatures in order of decreasing temper-
ature from 13 to -160 C. A slush bath can be defined as a Table I. Materials for Low Temperature Slush Baths (with
coolant consisting of a low melting liquid which has been parti- Liquid Nitrogen)
ally frozen by mixing with liquid nitrogen. It is prepared by
slowly pouring liquid nitrogen into a Dewar flask containing Solvent Tcmp., C. Solvent Temp., C.
the solvent while continuously stirring the mixture until the
desired consistency is obtained. When properly mixed, the con-
p-Xylene 13 + l o Ethyl acetate -84
p-Dioxane 12 n-Hexyl bromide -85
sistency of the crystallized solvent is that of a fluid slush which Cyclohexane 6 Methyl ethyl ketone -86
will maintain a constant temperature as long as the bath is Benzenc R Acrolein -88
kept slushy by occasionally blending in more liquid nitrogen. Formamide 2 Amyl bromide -88
Rondeau and Harrah (2) made use of an ethyl bromide Aniline -6 +Butanol a - 89
slush bath in measuring the melting point of 3-hexyne. The Diethylene glycol - 15,
5 s-Butanol -89
temperature rise 01 this particular slush was approximately Cy cloheptane - 12 Isopropyl alrohol a -89
0.2 C. per minute when left standing a t room temperature in Methyl benzoate - I2 Nitroethane -90
Benzonitrile -13 Heptane -91
an uncovered 47 X 125 mm. Dewar flask. Benzyl alcohol - 15 %-Propyl acetate -92
With certain solvents, such as diethylene glycol and some of Propargyl alcohol - 17 2-Nitropropane -93
the alcohols, a heavy sirup is formed. Although not a5 conven- 1,2-Dichlorobenzene - 18 Cyclopentane -93
ient t o handle, a viscous bath is still useful for cooling purposes. Tetrachloropthyleue -22 Ethyl benzcne -94
The solvents in Table I that form a highly viscous coolant have Corbon tetrachloride -23 Hexane -94
heen marked with a n asterisk. 1,3-Dichlorobenzene - 25 Toluene -95
The temperatures listed in the table are given to the nearest Xitromcthane -29 Cumene - 97
degree centigrade. Measurements were made with a calibrated o-Xylene - 29 Methanol -98
toluene thermometer for temperatures above -95 C. and Bromobenxene -30 Methyl acetate - 98
with a calibrated pentane thermometer for readings below
Iodobenmie -31 Isobutyl acetate -99
nt-Toluidine - 32 Amyl chloridc -99
-95 C. All of the solvents used were reagent grade chemicals. Thiophene -38 Butyraldehyde - 99
In general, the purer the compound, the narrower its dush .hetonitrile - 11 Propyl iodide -101
bath temperature range; however, the variation in temperature Pyridine -42 Butyl iodide - 103
with purity has not been studied. Benzyl bromide -43 Cyclohexene - 104
Slush baths are especially useful in degassing liquids and Cyclohexyl rhloride -44 s-Butyl amine - 105
fractionating mixtures. Irewton (1) has desigr.ed a low tempera- Chlorobenzenc - 45 Isooctane - 107
ture reflux condenser in which the liquid can he refluxed under m-Xylene -47 1-Nitropropane - 108
vncuum a t a temperature where its vapor preqsure is negligible.
n-Butyl amine - 50 Ethyl iodide - 109
Benzyl acetate - 52 Propyl bromide -110
The method requires the use of a constant temperature cooling n-Octane - 56 Carbon disulfide -110
bath to maintain the desired temperature. The convenience Chloroform - 63 Butyl bromide -112
of a table of slush bath temperatures in using such a technique Methyl iodide - 66 Ethyl alcohol Q - 116
is readily apparent. tert-Butyl amine - 68 Isoamyl alcohol Q -117
Volatile mixtures can be separated in a vacuum system by Trichloroethylene - 73 Ethyl bromide -119
fractional condensation through a series of three traps cooled Isopropyl acetate -73 Propyl chloride - 123
to successively lower temperature. Here again, the judicious o-Cymene - 74 Butyl chloride - 123
selection of the proper slush bath temperature determines the p-Cymene - 74 Acetaldehvde - 124
efficiency of the separation.
Butyl acetate -77 Methyl r&lohcxane - 126
Isoamyl aretate -79 n-Propanol 5 - 127
Acrylonitrile -82 n-Pentane -131
LITERATURE CITED n-Hexyl chloride -88 1,5-Hexadiene - 141
(1) Newton, AB., Anal. Chem. 28, 1214 (1956).
Propyl amine -83 i.w-Pen tane - 160
(2) Rondeau, R.E., Harrah, LA., J. CHEM.ENQ.~ ) A T A 10, 84
(1965). a High viscosity slush.
RECEIVED
for review April 20, 1965. Accepted September 16, 1965. -
194 JOURNAL OF CHEMICAL A N D ENGINEERING D A T A
TLC VISUALIZATION SOLUTIONS
Ultraviolet Light
Commercial TLC plates are impregnated with a fluorophor, which can be quenched by certain
compounds. In this event, the analyte appears as a dark spot (non-fluorescing) against a bright
background when irradiated with short-wavelength UV light (254 nm). Fluorescence can be quenched
by extended systems as well as amines and thiols. However, not all compounds are effective
quenchers; therefore, other means of visualization are sometimes needed.
p-Anisaldehyde Stain 1
This stain is an excellent multipurpose visualization method for examining TLC plates. It is sensitive to
most functional groups, especially those which are strongly and weakly nucleophilic. It tends to be
insensitive to alkenes, alkynes, and aromatic compounds unless other functional groups are present in
the molecules which are being analyzed. It tends to stain the TLC plate itself, upon mild heating, to a
light pink color, while other functional groups tend to vary with respect to coloration. It is recommended
that a record is kept of which functional group stains which color for future reference, although these
types of comparisons may be misleading when attempting to ascertain which functional groups are
present in a molecule (especially in complex molecules). The shelf-life of this stain tends to be quite
long except when exposed to direct light or solvent is allowed to evaporate. It is recommended that the
stain be stored in a 100 mL wide mouth jar wrapped with aluminum foil to ensure a long life time.
Preparation: To 135 mL of absolute ethanol was added 5 mL of concentrated sulfuric acid, 1.5 mL of
glacial acetic acid and 3.7 mL of p-anisaldehyde. The solution is then stirred vigorously to ensure
homogeneity. The resulting staining solution is ideally stored in a 100 mL wide mouth jar covered with
aluminum foil.
p-Anisaldehyde Stain 2
A more specialized stain than the above, used for terpenes, cineoles, withanolides, acronycine, etc.
As above, heating with a heat gun must be employed to effect visualization.
This stain is excellent for functional groups whose pKa is approximately 5.0 and lower. Thus, this stain
provides an excellent means of selectively visualizing carboxylic acids. These will appear as bright
yellow spots on either a dark or light blue background and typically, it is not necessary to heat the TLC
plate following immersion. This TLC visualization method has a fairly long lifetime (usually weeks)
thus, it is not often necessary to circle such spots following activation by staining.
Preparation: To 100 ml of absolute ethanol is added 0.04 g of bromocresol green. Then a 0.1 M
solution of aqueous NaOH is added dropwise until a blue color just appears in solution (the solution
should be colorless prior to addition). Ideally, these stains may be stored in 100 mL wide mouth jars.
The lifetime of such a solution typically depends upon solvent evaporation. Thus, it would be
advantageous to tightly seal such jars in-between uses.
Preparation: Prepare a 1% solution of of cerium (IV) ammonium sulfate in 50% phosphoric acid.
Cerium Molybdate Stain (Hanessian's Stain)
This stain is a highly sensitive, multipurpose (multifunctional group stain). One word of caution, very
minor constituents may appear as significant impurities by employing this stain. To ensure accurate
results when employing this stain, it is necessary to heat the treated TLC plate vigorously (a heat gun
works well). Thus, this may not be a stain to employ if your sample is somewhat volatile. The TLC
plate itself will appear as either light blue or light green upon treatment, while the color of the spots
may vary (although they usually appear as a dark blue spot). Typically, functional groups will not be
distinguishable based upon the color of their spots; however, it would be worth while to make a list of
potential colors of various functional groups as you experience variations in colors. This may permit
future correlations which may prove beneficial when performing similar chemistry on related
substrates.
Preparation: To 235 mL of distilled water was added 12 g of ammonium molybdate, 0.5 g of ceric
ammonium molybdate, and 15 mL of concentrated sulfuric acid. Storage is possible in a 250 mL wide
mouth jar. This stain has a long shelf-life so long as solvent evaporation is limited. It may also prove
worth while to surround the jar with aluminum foil as the stain may be somewhat photo-sensitive and
exposure to direct light may shorten the shelf-life of this reagent. It is worth while to also mention that it
would be beneficial to circle the observed spots with a dull pencil following heating as this stain will
eventually fade on the TLC plate after a few days.
Cerium Sulfate
Preparation: Prepare an aqueous solution of 10% cerium (IV) sulfate and 15% sulfuric acid.
Dinitrophenylhydrazine (DNP)
Developed mainly for aldehydes and ketones; forms the corresponding hydrazones, which are usually
yellow to orange and thus easily visualized.
Preparation: Dissolve 12g of 2,4-dinitrophenylhydrazine, 60mL of conc. sulfuric acid, and 80mL of
water in 200mL of 95% ethanol.
Ferric Chloride
Iodine
The staining of a TLC plate with iodine vapor is among the oldest methods for the visualization of
organic compounds. It is based upon the observation that iodine has a high affinity for both
unsaturated and aromatic compounds.
Preparation: A chamber may be assembled as follows: To 100 mL wide mouth jar (with cap) is added
a piece of filter paper and few crystals of iodine. Iodine has a high vapor pressure for a solid and the
chamber will rapidly become saturated with iodine vapor. Insert your TLC plate and allow it to remain
within the chamber until it develops a light brown color over the entire plate. Commonly, if your
compound has an affinity for iodine, it will appear as a dark brown spot on a lighter brown background.
Carefully remove the TLC plate at this point and gently circle the spots with a dull pencil. The iodine
will not remain on the TLC plate for long periods of time so circling these spots is necessary if one
wishes to refer to these TLC's at a later date.
Morin Hydrate
Ninhydrin
Preparation: Dissolve 1.5g ninhydrin in 100mL of n-butanol and then add 3.0mL acetic acid.
Phosphomolybdic acid stain is a good "universal" stain which is fairly sensitive to low concentrated
solutions. It will stain most functional groups, however it does not distinguish between different
functional groups based upon the coloration of the spots on the TLC plate. Most often, TLC's treated
with this stain will appear as a light green color, while compounds of interest will appear as much
darker green spots. It is necessary to heat TLC plates treated with this solution in order to activate the
stain for visualization. The shelf life of these solutions are typically quite long, provided solvent
evaporation is kept to a minimum.
Potassium Permanganate
This stain is excellent for functional groups which are sensitive to oxidation. Alkenes and alkynes will
appear readily on a TLC plate following immersion into the stain and will appear as a bright yellow
spot on a bright purple background. Alcohols, amines, sulfides, mercaptans and other oxidizable
functional groups may also be visualized, however it will be necessary to gently heat the TLC plate
following immersion into the stain. These spots will appear as either yellow or light brown on a light
purple or pink background. Again it would be advantageous to circle such spots following visualization
as eventually the TLC will take on a light brown color upon standing for prolonged periods of time.
Preparation: Dissolve 1.5g of KMnO4, 10g K2CO3, and 1.25mL 10% NaOH in 200mL water. A typical
lifetime for this stain is approximately 3 months.
Vanillin
Very good general stain, giving a range of colors for different spots.
Preparation: Prepare a solution of 15g vanillin in 250mL ethanol and 2.5mL conc. sulfuric acid.
1 I I L
<40 26- 40- 63-
40 63 200
Rapid Chromatographic Technique for Preparative Figure 2. Silica gel particle size6 (pm):( 0 )r h : ( 0 )r / ( w / 2 ) .
Separations w i t h Moderate Resolution
W. Clark Still,* M i c h a e l K a h n , a n d Abhijit M i t r a
Psz24
ples of greater than 1 or 2 g must be separated. In recent years 41
several preparative systems have evolved which reduce sep-
aration times to 1-3 h and allow the resolution of components
having Al?f 1 0.05 on analytical TLC. Of these, medium
I
pressure Chromatography' and short column chromatogra-
phy2 have been the most successful in our laboratory. We have 0 100 200 300 400
recently developed a substantially faster technique for the
Figure 4. Sample size (mg).
routine purification of reaction products which we call flash
chromatography. Although its resolution is only moderate
( L R f L 0.15), the system is extremely inexpensive to set up
and operate and allows separations of samples weighing
0.01-10.0 g3 in 10-15 m ~ n . ~
Flash chromatography is basically an air pressure driven
hybrid of medium pressure and short column chromatography
which has been optimized for particularly rapid separations.
Optimization studies were carried out under a set of standard
conditions5 using samples of benzyl alcohol on a 20 mm X 5
in. column of silica gel 60 and monitoring the column output
with a Tracor 970 ultraviolet detector. Resolution is measured
in terms of the ratio of retention time ( r )to peak width ( w , w / 2 )
(Figure l),and the results are diagrammed in Figures 2-4 for
r
Air
variations in silica gel particle size, eluant flow rate, and
sample size.
A number of interesting facts emerge from these data. First,
we find that one of the most popular grades of silica gel 60,
70-230 mesh (63-200 pm),gives the poorest resolution of any
gel studied under our standard conditions. Second, particle
sizes less than 40 pm offer no improvement in resolution with
our method of packing.' Column performance is quite sensi- Flow Controller
tive to the rate of elution m d is best with relatively high eluant V A
flow rates. The solvent head above the adsorbent bed should
drop 2.0 f 0.1 in./min for optimum resolution with mixtures
of ethyl acetate/petroleum ether (30-60 "C).EFinally, the peak
width shows the expected increase with the sample size.
Sample recovery was 295%.
Figure 5.
Table I
I,"? . . a . . . c. . . . . . .
RI I 2 Y
e -
5
-am-
7 1 q IO
*
II 12
T
I
column
diameter,
mm
10
20
vol of
eluant,"
mL
100
200
sample:
typical loading (mg)
ARf 2 0.2 I R f 2 0 . 1
100
400
40
160
typical
fraction
size,
mL
5
10
30 400 900 360 20
?CRUDE FRACTIONS
SAMPLE 40 600 1600 600 30
50 1000 2500 1000 50
Figure 6.
0 Typical volume of eluant required for packing and elution.
Bu3Sn' Qk Bu3s"+Q,,oH
OH Bu
is placed fairly tightly over the bleed port (C). This will cause the
pressure above the adsorbent bed to climb rapidly and compress the
silica gel as solvent is rapidly forced through the column. It is im-
I 2 portant to maintain the pressure until all the air is expelled and the
lower part of the column is cool; otherwise, the column will fragment
and 0.25, respectively, in 5% ethyl acetate/petroleum ether. and should be repacked unless the separation desired is a trivial one.
A 1.0-g mixture of 1 and 2 (ARf = 0.09) easily separated with Particular care is necessary with large diameter columns. The pressure
only a 65-mg mixed fraction in 7 min on a 40-mm diameter is then released and excess eluant is forced out of the column above
column (500 mL of 5% EtOAc/petroleum ether). the adsorbent bed by partially blocking the bleed port (C). The top
of the silica gel should not be allowed t o run dry. Next the sample is
If the components to be separated are closer o n TLC than applied by pipette as a 20-250% solution in the eluant to the top of the
ARf 0.15, increased resolution may be achieved by using a adsorbent bed and the flow controller is briefly placed on top of the
longer (e.g., 10 in.) column of gel alternatively a less polar column to push all of the sample into the silica gel." The solvent used
solvent can be used. Such a solvent can be selected to move to pack the column is ordinarily reused to elute the column. The walls
the desired components on TLC to R f = 0.25 without in- of the column are washed down with a few milliliters of fresh eluant,
creasing the elution times too drastically. In either case, the the washings are pushed into the gel as before, and the column is
carefully filled with eluant so as not to disturb the adsorbent bed. The
column should be only lightly loaded with sample and a2rapid flow controller is finally secured to the column and adjusted to cause
flow rate of 2 in./min should be maintained. Sloweir flows the surface of the solvent in the column to fall 2.0 in./min. This seems
clearly give poorer resolution with ethyl acetate/petroleum to be an optimum value of the flow rate for most low viscosity solvents
ether mixtures. for any column diameter with the 40-63 km silica gel. Fractions are
Notes J . Org. Chenz., Vol. 43, No. 14, 1978 2925
collected until all the solvent has been used (see Table I to estimate
the amount of solvent and fraction size). It is best not to let the column
run dry since further elution is occasionally necessary. Purified
components are identified as described in the text by TLC. If the
foregoing instructions are followed exactly, there is little opportunity
for the separation to fail.
Although we generally pack fresh columns for each separation,the
expense of large-scale separations makes it advantageous to reuse
large diameter columns. Column recycling is effected by first flushing 1 2
(rate = 2 in./min) the column with approximately 5 in. of the more Tr = trityl
polar component in the eluant (generally ethyl acetate or acetone)
and then with 5 in. of the desired eluant. If the eluant is relatively
nonpolar (e.g., 110% EtOAc/petroleum ether), it may be more ad-
visable to use a flushing solvent (e.g., 2 0 4 0 % EtOAc/petroleum ether)
which is somewhat less polar than the pure high polarity compo-
nent.
Registry No.-l,66417-28-5; 2,66417-27-4.
References and Notes
(1) Such units have been described and used extensively by J. M. McCali. R .
E. TenBrinkt, and C. H. Lin at the Upjohn Company and A. I. Meyers at
Colorado State University
(2) B. J. Hunt and W.Rigby, Chern. Ind. (London), 1868 (1967). 4
(3) This is not a limitation but is merely the scale range which we have
used. 3
(4) This is the total time required for column packing, sample application, and a, R = NH,
complete elution.
Standard conditions: 5 in. high bed of 40-63 p m silica gel 60 in a 20 mm b, R = CH,
diameter column packed as described in text, 2.0 in. of solvent flow/min, c, R = SH
200 mg of benzyl alcohol. 25% ethyl acetate/petroleum ether eluant. d , R = phenyl
These gels are manufactured by E. Merck and are the following grades: e,R=H
<40 p m (silica gel H,No. 7736), 25-40 p m (LiChroPrep Si60, No. 9390),
40-63 pm (silica gel 60, No. 9385), 63-200 p m (silica gel 60, No.
10180\. occur at 6 25.66 and 27.54, within the range strongly indicative
of a p configuration (25.5 f 0.2 and 27.5 f 0.2).7,s
(7) Slurry packing, incremental dry packing, or single portion dry packing gave
identical results with the 40-63 p m gel. Since the last technique was the
It has been shown that the a-anomer of 1is more stable than
simplest, it was employed in ail our studies.
the p,4 and recently a rationalization for this seemingly un-
(8) This is a particularly good general solvent system. For extremely polar
compounds, acetone/petroleum ether or acetone/methylene chloride usual behavior has been p r e ~ e n t e d On
. ~ this basis it seems
mixtures are often useful. Significantly higher viscosity solvents will require
slower optimum resolution flow rates. likely that the a anomer of 2 is also more stable than the @.The
conditions involved in the preparation of 2 (low-temperature,
(9) If this R, is given by a solvent having <2% of the polar component, a slightly
less polar eluant is desirable. Thus if 1 % ethyl acetate/petroleum ether
aprotic solvent) probably do not allow equilibration, though
gives a compound an R, of 0.35 on TLC, the column is run with 0.5% ethyl
acetate. there is some leakage to the a-anomer. Further support for
these postulates is provided by the finding that p-2 is isom-
(10) 40-63 p m gel is also used for medium pressure chromatography' and is
available from MCB in 1 kg ($45/kg) or 25 kg ($16/kg) lots.
erized readily under basic conditions to an alp mixture which
(11) if the sample is only partially soluble in the eluant, just enough of the more
is predominantly a.
polar component is added to give complete dissolution. Large quantities
of very polar impurities are best removed prior to chromatography so that
Condensation of 2 with guanidine, acetamidine, thiourea,
excessive quantities of solvent or large increases in solvent polarity will
be unnecessary for sample application. and benzamidine under basic conditions afforded the pro-
tected nucleosides 3a-d as anomeric mixtures (ca. 3:1, alp)
which were chromatographically inseparable. That the major
anomers after condensation are all a is also indicated by the
chemical shifts of the isopropylidene methyls. For example,
Homo- C-nucleosides. The Synthesis of Certain the shifts of the methyls in 3a are at 6 25.09 and 26.33, clearly
6-Substituted 4-Pyrimidinonesl in the a range (24.9 f 0.3 and 26.3 f 0.2).7,SIn view of the
John A. Secrist 111 ready isomerization of 8-2 to a mixture of anomers containing
predominantly a-2, it seems likely that equilibration is oc-
Department oJ Chemistry, T h e Ohio S t a t e University, curring prior to cyclization, and that the anomeric composition
Columbus, Ohio 43210 of 2 after equilibration dictates the ratio of a - and @-homo-
Receioed February I , 1978 C-nucleosides. Desulfurization of 3c with Raney Nickel in
refluxing 95% ethanol provided the hydrogen-substituted
The chemistry of C-nucleosides has received considerable compound 3e. Interestingly, while both urea and formamidine
attention recently due to the biological activities of naturally reacted with 2, neither led to the formation of cyclized mate-
occurring compounds such as showdomycin, formycin, and rial under a variety of conditions. The free nucleosides 4a-e
oxazinomycin.2 Though synthetic methodology has evolved were obtained by treatment of 3a-e with either methanolic
for the preparation of a number of C-nucleoside analogues,2 hydrogen chloride or aqueous trifluoroacetic acid for several
only one investigation has dealt with the synthesis of homo- hours. These acidic conditions, even over longer periods of
C- nucleoside^,^ compounds with a methylene unit between time (2 days), caused no change in the alp ratio of the nucle-
a carbon of the nitrogen base and the standard D-ribose osides. Chromatographic separation of the free nucleoside
moiety. This note describes the facile synthesis of a series of anomers was once again not possible. 4e was also available by
6-substituted 4-pyrimidinone homo-C-nucleosides from the desulfurization of 4c.
ester 1, which is available in three steps from D - r i b o ~ e . ~ , ~ The 13C NMR spectra of the free nucleosides contained
Treatment of 1 with lithio-tert-butyl acetate6 in toluene characteristic signals for the five compounds, and all values
a t 0 OC for several hours affords an anomeric mixture (ca. 3:1, are reported in the Experimental Section. Salient 1H NMR
@la)of the p-keto ester 2 in 75% yield. The assignment of /3 to values are the methyl singlet of 4b at 6 2.28 and the pyrimidine
the major anomer was made on the basis of l3C NMR data. In C2H singlet of 4e at 6 8.92, as well as the pyrimidine C5 signal
particular, the isopropylidene methyls of the major anomer of all five nucleosides in the neighborhood of d 6.0.
2.81 and 3.30 ppm in acetone and DMSO, respectively. In the former solvent, it is often seen as a 1:1:1 triplet, with 2JH,D ) 1 Hz.
b 2,6-Dimethyl-4-tert-butylphenol. c The signals from exchangeable protons were not always identified. d In some cases (see note a), the
coupling interaction between the CH2 and the OH protons may be observed (J ) 5 Hz). e In CD3CN, the OH proton was seen as a multiplet
at 2.69, and extra coupling was also apparent on the methylene peak. f Long-chain, linear aliphatic hydrocarbons. Their solubility in
DMSO was too low to give visible peaks. g Hexamethylphosphoramide. h In some cases (see notes a, d), the coupling interaction between
the CH3 and the OH protons may be observed (J ) 5.5 Hz). i Poly(dimethylsiloxane). Its solubility in DMSO was too low to give visible
peaks.
show their degree of variability. Occasionally, in order ambiguous, a further 1-2 L of a specific substrate were
to distinguish between peaks whose assignment was added and the spectra run again.
7514 J. Org. Chem., Vol. 62, No. 21, 1997 Notes
For D2O solutions there is no accepted reference for data are shown in Figure 1. The solid line connecting
carbon chemical shifts. We suggest the addition of a drop the experimental points corresponds to the equation
of methanol, and the position of its signal to be defined
as 49.50 ppm; on this basis, the entries in Table 2 were ) 5.060 - 0.0122T + (2.11 10-5)T2 (1)
recorded. The chemical shifts thus obtained are, on the
whole, very similar to those for the other solvents. which reproduces the measured values to better than 1
Alternatively, we suggest the use of dioxane when the ppb. For the 0 - 50oC range, the simpler
methanol peak is expected to fall in a crowded area of
the spectrum. We also report the chemical shifts of ) 5.051 - 0.0111T (2)
sodium formate (171.67 ppm), sodium acetate (182.02 and
23.97 ppm), sodium carbonate (168.88 ppm), sodium gives values correct to 10 ppb. For both equations, T is
bicarbonate (161.08 ppm), and sodium 3-(trimethylsilyl)- the temperature in C.
propanesulfonate [54.90, 19.66, 15.56 (methylenes 1, 2,
and 3, respectively), and -2.04 ppm (methyls)], in D2O. Acknowledgment. Generous support for this work
Temperature Dependence of HDO Chemical by the Minerva Foundation and the Otto Mayerhoff
Shifts. We recorded the 1H spectrum of a sample of D2O,
Center for the Study of Drug-Receptor Interactions at
Bar-Ilan University is gratefully acknowledged.
containing a crystal of sodium 3-(trimethylsilyl)propane-
sulfonate as reference, as a function of temperature. The JO971176V
4096 J. O r g . C h e m . 1994,59, 4096-4103
The ability to deduce the proper set of coupling constant (J)values from a complex first-order
multiplet in a IH NMR spectrum is an extremely important asset. This is particularly valuable to
the task of assigning relative configurations among two or more stereocenters in a molecule. Most
books and treatises that deal with coupling constant analysis address the less usefid operation of
generating splitting trees to create the line pattern from a given set of J values. Presented here
are general and systematic protocols for the converse, Le., for deducing the complete set of J values
from the multiplet. Two analytical methods (A, systematic analysis of line spacings, and B,
construction of what can be called inverted splitting trees) are presented first. A reasonably
thorough and systematic set of graphical representations of common doublet of doublets (dd's),
ddd's, and dddd's are then presented. These constitute a complementarymethod for identification
of Js through visual pattern recognition. These approaches are effective strategies for extraction
of coupling constant values from even the most complex first-order multiplets.
II
-
A J = 7,4, and 2 Hz throughout the discussion.
f 4Hz (rel. int. = It is important to recognize that even though various
2 Hz
1
I 1:1:1:1:1:1:1:1) sets of lines can have the same spacing, not all of those
sets represent a coupling constant; some are coincidental.
11 12 13 14 s 1 6 1 1
7 1
a This is often a point of confusion. For example the
distances between lines 1to 2,2 to 3, and 3 to 4 in entry
b in Table 1 are all identical even though only (1 to 2)
and (3 to 4) represent an actual J; (2 to 3) is the
4 HZ difference between the two S s (and (1 to 4) is the sum
of the two Ss).
J = 4 , 4 , and 2 Hz
The situation for doublet of doublet of doublets (ddds,
2 Hz bottom portion of Chart 1)is somewhat more complex,
- 1 1 but still readily decipherable. For this treatment it is
useful to define the S s as Js,Jm,and J1 to correspond to
the smallest, medium, and largest S s of the ddd, respec-
tively. Again, the lines are numbered sequentially from
Figure 1. Examples of ddds where JI2 J, + J, (case i) and left to right. The relative line intensities are important.
where Jl s J, + J, (case ii).
In the absence of special relationships, all lines are of
equal intensity, and for a ddd there is a total of eight
from within a given multiplet is most obvious for simple lines [cf. the example in case i) in Figure 11. One
doublet of doublets (dds). If the lines of the multiplet frequently encounters multiplets that contain line su-
are numbered sequentially from, say, left to right (cf. perposition, which is always accompanied by differential
entry a in Table 11,two (of the six) pairs of line spacings relative line intensities and a reduction in the total
are associated with the smaller J value. As also sum- number of lines [cf. the example in case ii) in Figure 11.
marized in the top portion of Chart 1,two more pairs of Under any circumstances the sum of the relative line
line spacings are associated with the larger J, and the intensities will always equal 8 for a ddd (4 for a dd, 16
remaining two pairs represent, respectively, the sum of for a dddd, etc.). Lines of relative intensity greater than
and difference between the large and small S s . The one are assigned more than one line number [e.g., the
4098 J. Org. Chem., Vol. 59, No. 15, 1994 Hoye et al.
sequence 1-(2/3/4)-(5/6/7)-8 for a 1:3:3:1 apparent Chart 2. Protocol for Generating an Inverted
quartet (ddd with three equivalent J's) or the example Splitting Tree: Identification of Individual
in case ii)]. Be aware that "leaning" within a given Coupling Constants as Applied to the dddd from
multiplet, arising from intermediate AvlJ values for Entry e of Table 9
which first-orderedness still holds, will distort the rela-
tive intensities from perfect integer ratios.
For doublet of doublet of doublets two situations can
arise: case i where J1 IJ, +
J , and case ii where J1 5
+
J,,, J,. A typical example for each case is shown in
Figure 1.6 With the lines now numbered as described
above and with reference to the bottom portion of Chart
1, one can assign the values of Js, Jm, and J1 in each of
these multiplets by measuring the appropriate line
spacings. The distance between lines 1 and 2 (i.e., (1 to
2)) always corresponds to the smallest coupling constant
(J,) and { 1 to 3) always corresponds to the next smallest
coupling constant (J,). However, JIcorresponds to (1
t o 5) for case i but to (1 to 4) for case ii. The task of
identifying J 1 from within dddd's (or higher multiplets)
by this strategy is considerably more difficult. However, -
I
JS
I d Ill1 1
removing the smallest coupling (J,)from a dddd, thereby
creating a simplified ddd, permits application of the above
strategy. On the other hand, this simplification is the ii)
first step in creating what we call here an inverted
splitting tree, a process that is generalized next. iii)
B. Inverted Splitting Tree Generation. The pro-
cess of deconvoluting a first-order multiplet more complex
than a ddd by the method described in A is not straight-
forward. We now describe a systematic approach that
is applicable to even the most complex first-order mul-
tiplets. This strategy amounts to generation of an
inverted splitting tree. Many readers are familiar with
iv) c, w LJ
the process of generating the appearance of a first-order
multiplet from a given set of J values, and many texts
present the creation of splitting trees from a single line
by sequential branching (most easily done proceeding
from the largest J to the smallest). However, the ability
to do the converse, to deduce the proper individual J's
uu
from a given complex multiplet, is the more valuable yet
more difficult skill to attain.
The total number of lines and the relative line intensi-
ties within a given multiplet are important parameters.
Recall that dd's, ddd's, and dddd's with no special
relationships will consist of 4, 8, and 16 lines, respec-
tively, all of equivalent intensity and that the presence cult step in the process. A dddd will contain eight such
of special relationships among the coupling constants pairs. Each pair will have a partner pair symmetrically
both reduces the total number of lines and alters the arranged by reflection through the midpoint of the
relative line intensities. The sum of the line intensities, multiplet. Those pairs associated with lines of intensities
appropriately normalized, will be identical for every > 1 will be partially or totally coincident with other pairs.
multiplet of a given class (Le., 4 for dd's, 8 for ddd's, and Thus, the total number of pairs associated with any
16 for dddd's). single line is equal to the relative intensity of that line.
A general protocol for deducing the individual J's for As seen in panel ii), this is manifested in the number of
a given multiplet (illustrated in Chart 2 specifically for times the ends of interconnecting arcs intersect a given
the ten-line 1:2:1:1:3:3:1:1:2:1dddd corresponding to line position (or vertical tick). That is, lines of intensities
entry e of Table 9) consists of the following: 1, 2, and 3 in the multiplet in Chart 2 have the ends of
Step i: As discussed earlier, the distance between lines one, two, or three arcs, respectively, terminating at that
1 and 2 (or the, say, left-hand-most pair) always repre- line position [ef. panel ii)].
sents the smallest J value of the multiplet [cf.,J,in panel Step iii: Identify the centers of each of the pairs
i) of Chart 21. If their relative intensity is 1:1, then the created in step ii, which collectively represent a new,
smallest J is unique; if it is 1:2 (or 1:3, etc.), then there simplified pattern (a ddd) as indicated by the dots in
are two (or three, etc.) identical smallest S s . panel iii) as well as the tick marks in panel iv) in Chart
Step ii: Identify the full set of pairs of lines separated 2. Notice that this submultiplet (in this instance a seven-
by this smallest J value. This is perhaps the most diffi- line 1:1:1:2:1:1:1ddd) is the residual pattern that would
remain after selective decoupling of the spin responsible
( 5 ) Notice that the examples chosen to illustrate cases i and ii were for the smallest J in the original multiplet. The spacing
somewhat arbitrarily chosen. Examples could easily have been selected
in which the case i and case ii multiplets contained fewer than and between the first (or last) pair of dots in this simplified
exactly eight total lines, respectively, rather than the converse. multiplet represents the next smallest J of the original
First-Order Multiplet Analysis in lH NMR Spectroscopy J. Org. Chem., Vol. 59, No. 15, 1994 4099
Table 1. dd's Table 2. ddd's Where J, = J, (app dt's)
a D 4 4 20
b I2 4 4 20
C 9 4-4 17
d 8 4-4 16 Jir-Jir+J
0 7 4-4 15
f 6 4-4 14
II 5 4-4 13
h 4 44 12 J i r - J i ~
1B
1 I
z4
I 3 4-4 11
a"' -
I 2 44 IO
r
25 1 4-4 9
H'
''*e/\\ -
6 - 0.44;d d J 3.8,3.8 Hr; entry e
I 0 4-4 8
-
11
b
h3.72, ddd, J I 11.3, 11.3,2.5 Hi
mw k
&D 15 ID 6 D -S -ID -15 Ik
-
ni
-en1
a 9 4 3 1 6 a 10 4 2 16
b 8 4 3 1 5 b 8 4 2 1 4
m
C 7 4 3 14Jf,=Je+Jlz 7 4 2 1 3
" C
d 6 4 3 1 3
ci 6 4 2 12Jls=Jfa+Jj;
0 5 4 3 1 2 e 5 4 2 1 1
f 4 4 3 11 Jl,-Jlj f 4 4 2 10 Je-Jfj
Q 3 4 3 10 Ji5-Jj~ 0 3 4 2 9
h 2 4 3 9 h 2 4 2 8 Jf5~Ja
i i t!!tfl,!t 1 1 4 2 7
I
-
~ @ b2.58.ddd,J-18.2.9.6.8.4HZ
88 II *I I 8 4 -1s -15 w
mry C
Included in each table is one (or two) representative Table 1. ddd's Where J, JI
multiplet(s) arising from the circled (or boxed) proton(s)
taken from 'H NMR spectra of known molecules.6 Al-
though many of these presentations are simulations' of
tabulated J values (since they are taken from 'pre-
Lentry Multiplet Appearance
Jz Jy
J u J'r Jfr J'e
9 8 1 1 6
Jr ' Relation-
8hlPS
a @
b
b
C
El d
0
d
t
r 9
h
0
I
I
i
k
@ 62.80, dddd,J -H
12.0.3.0.3.0, 1.0 Hz
entry a
0-8 2-2 20
6-6 2. 16
65 2-2 14
/ml .12.10
!
% .6'4'.2
! fA!!Ak!
0 2 4 6 8
a
10 12*
@b0.61. -
dddd,J 8.7, 5.3. 3.4,3.4 HZ
nnby 0
?
,
9 1 Al 1 1 1 1 1 1 1 1
h 1 Ill 111 Al 1
I 1 llllllllll 1
I 1 1 1 l ~ l ~ l ~ 1l l A
6.5 Hz
k 11 l l l l l l l l 11
I I 111 1 1 1 1
.h , i, . i ' i . 6
-
I . . .
42.10 1 i'b'h'b'ti
- 6.5 Hz
'"'
a
r
Table 11. dddd's Where J y
Multlplrt Appearancr
t t ! ! ! :t A A! a a tf c 12 7 3
* Jx
2
F-Z
24
Jw
JIO-JIS+J~S+JIZ
Me' 0 @i 0
b ! !! ! : it!!!! a b tf t I1 7 3 2 23
'eM
0 Me
Ph"' CF~
!!!!!!1I!A!tA! s 10
10 7 3 2 22 Jio-Jis+Jis Me0
! t ! ! ! !!!! a r, A!' f 9 7 3 2 21 JIO-JIJ+JIZ
hoye@chem.umn.edu
Received July 26, 2000 (Revised Manuscript Received March 28, 2002)
Introduction
Chart 1. Steps for Identifying J Values in Sequence from Smallest to Largest (J1 to Jn) ({1 to x}
Represents the Distance between the Peak Corresponding to Component 1 to the Peak Corresponding to
Component x)
(Hz) + 1/2(+J1 + J2 + J3 ... + Jn) - [ (Hz) + 1/2(-J1 - J2 + J3 ... + Jn)] ) J1 + J2 and {1 to 5} (or {1 to 4}) ) (Hz) + 1/2(+J1 + J2 +
J3 ... + Jn) - [ (Hz) + 1/2(+J1 + J2 - J3 ... + Jn)] ) J3.
Figure 3. Examples of experimental multiplets for which the complete set of J values has been determined.
the Js, arrived at by sequential application of steps i-vi, Acknowledgment. This study was supported by a
is shown. grant awarded by the DHHS (CA-76497). We thank Mr.
B. M. Eklov for help with rendering the graphics.
This method has proven to be very practical. Com-
monly encountered first-order multiplets can be quickly JO001139V
analyzed.6 Some selected multiplets from actual spec-
(8) For example, the vicinal coupling constants for the two protons
tra are presented in Figure 3 to further demonstrate shown in Figure 3d,e suggest that the hydrogen-bonded conformation
the power of this method. Notice that resolution en- 1 (with two gauche relationships between Ha and its methine neighbors
hancement/line broadening (vertical arrow in Figure and one gauche and two anti arrangements between Hb and its three
neighbors) is a major contributor in CDCl3 to the family of conformers
3e) can sometimes make the assignment of the 2n that define the solution structure of this polyol fragment. This is not
component numbers more straightforward. Finally, it necessarily to be expected because of the steric congestion flanking
the C(4)-C(5) bond and would be a very difficult issue to assess by
should not be overlooked that coupling constant values any method other than the magnitudes of coupling constants.
are valuable because they convey information about
geometry.7,8
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)+ =3)03 ",6 0,55'01 /&1& &+/ ,+5" *1&(1 1, ,(-&+).' 13'; '**'+1)&5 1, 1(" 1, -'1 13' ;&<,( )/'&*7 :2 ",6 *1&(1 13' ('*'&(03
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3&>'4 13&1 13' /&1& ('&55" *''; 1, 1'*1 *,;' ,13'( 3"%,13'*)*
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J,( 13&1 ",6 I+,= =3&1 &//)1),+&5 /&1& ",6 )+1'+/ 1, 0,55'01K4 *3,65/ &5*, )+056/' &55 13' *'01),+* 13&1 =)55 -, )+ 13'
&+/ 3&>' & %5&6*)?5' ,(-&+).&1),+4 -)>' 13' ,615)+' 1, ;'7 S);9 \C%'();'+1&5 *'01),+ J&1 13' 5'>'5 ,2 %&(&-(&%3 *6?3'&/9
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J3"%,13'*).'K 13'" =)55 5,,I4 &+/ 3,= ",6 =)55 )+1'(%('1 13'; 2)5; *'01),+7
)2 ",6( 3"%,13'*)* )* 0,(('017 : =)55 1&I' 13)* ,615)+'4 &// ;"
,%)+),+*4 *6--'*1 03&+-'*4 &+/ ('16(+ )1 1, ",67 :1 6*6&55" 1&I'* M' :",5/+, 01- ;*,45,,*#1
2,6( 1, 2)>' )1'(&1),+* J,21'+ =)13 &//)1),+&5 'C%'();'+1*K 1,
&-('' ,+ &+ ,615)+'7 O3'+ =' )0>" &-(''/4 13' /&1& &(' 6*6&59 H3' ('*651* &+/ /)*06**),+ &(' 6*6&55" 0,;?)+'/7 H3)* *'09
5" )+ J,( 05,*' 1,K 2)+&5 2,(; J13&1 )*4 13' 1&?5'*4 2)-6('*4 '1074 )+ 1),+ *3,65/ ?' ,(-&+).'/ &00,(/)+- 1, ;&<,( 1,%)0*7 H3' *'%&9
13' ,615)+' =)55 ?' 13' 1&?5'*4 2)-6('*4777 )+ 13' %&%'(K7 (&1' %&(1* *3,65/ 3&>' *6?3'&/)+-* )+ ?,5/2&0' 1, ;&I' 13)*
E,6 0&+ 13'+ *1&(1 =()1)+-4 =)13 *,;' &**6(&+0' 13&1 ;603 ,(-&+).&1),+ 05'&(4 &+/ 1, 3'5% 13' ('&/'( *0&+ 13(,6-3 13'
,2 ",6( %(,*' =)55 ?' 6*'/7 2)+&5 1'C1 1, 2)+/ 13' %&(1* ,2 )+1'('*17 H3' 2,55,=)+- 5)*1
H3' I'" 1, '22)0)'+1 6*' ,2 ",6( &+/ ;" 1);' )* 13&1 =' *1&(1 )+056/'* 'C&;%5'* ,2 %3(&*'* 13&1 ;)-31 %5&6*)?5" *'(>' &*
'C03&+-)+- ,615)+'* &+/ %(,%,*&5* &* '&(5" )+ & %(,<'01 &* %,*9 *'01),+ 3'&/)+-*N
*)?5'7 ;# 1#+? 51-"$ 01@ 4*$456,+014",? A0*+ 51+*/ +)" 4#//"4+*#1 ! S"+13'*)* ,2 $5I&+' H3),5*
%(,<'01 )* '>'( 0,;%5'1'4 &+/ )1 *&>'* '+,(;,6* '22,(1 &+/ ! $?*,561' Z,+2)-6(&1),+ ,2 13' ])0)+&5 Q),5 ^+)1
;603 1);' 1, %(,%,*' & %5&6*)?5' %&%'( &+/ ,615)+' &* *,,+ &* ! R"*1'('*)* Z,(('5&1'* =)13 D,6-3+'** ,2 13' S6(2&0'
",6 *'' 13' ?&*)0 *1(6016(' ,2 & %(,<'017 \>'+ )2 =' /'0)/' 1, ! Q'%'+/'+0' ,2 13' D&1' Z,+*1&+1 ,+ H';%'(&16('
/, *)-+)2)0&+1 &//)1),+&5 =,(I ?'2,(' *'(),6*5" ,(-&+).)+- & ! H3' D&1' ,2 S'529\C03&+-' Q'0('&*'* =)13 13' 8,5&()1" ,2
%&%'(4 13' '22,(1 ,2 =()1)+- &+ ,615)+' =)55 3&>' 3'5%'/ 1, 13' S,5>'+1
-6)/' 13' ('*'&(037 H(" 1, ;&I' 13'*' *'01),+ 3'&/)+-* &* *%'0)2)0 &+/ )+2,(;&9
1),+9()03 &* %,**)?5'7 [,( 'C&;%5'4 13' %3(&*' @H3' D&1' ,2
S'529\C03&+-' Q'0('&*'* =)13 H3' 8,5&()1" ,2 H3' S,5>'+1A )*
:5C5 ="% ;,$<#/% ,?>),6*5" 5,+-'( 13&+ @L'&*6(';'+1 ,2 D&1'*A4 ?61 ;603
;,(' 6*'265 1, 13' ('&/'(7 :+ -'+'(&54 1(" 1, 0,>'( 13' ;&<,(
O3&1 &+ ,615)+' *3,65/ 0,+1&)+N 0,;;,+ %,)+1*N
! S"+13'*)* ,2 *1&(1)+- ;&1'()&5*
! Z3&(&01'().&1),+ ,2 %(,/601*
7' E*+/" ! L'13,/* ,2 03&(&01'().&1),+
! L'13,/* ,2 ;'&*6(';'+1
9' F5+)#$, ! D'*651* J(&1' 0,+*1&+1*4 0,+1&01 &+-5'*4 =3&1'>'(K
:+ 13' ,615)+'4 /, +,1 =()1' &+" *)-+)2)0&+1 &;,6+1 ,2 1'C14
<' FD,+$04+
?61 -'1 &55 13' /&1& )+ 13')( %(,%'( %5&0'N $+" 1'C1 *3,65/ *);9
Q, 1#+ =()1' &+ &?*1(&017 H3&1 0&+ ?' /,+' =3'+ 13' %&%'( %5" )+/)0&1' =3&1 =)55 -, )+ 13&1 *'01),+7
! S'01),+ R'&/)+-*
)* 0,;%5'1'7
! [)-6('* JA*+) 0&%1),+*K
! S03';'* J=)13 0&%1),+* &+/ 2,,1+,1'*K
G' 81+$#-54+*#1 ! \B6&1),+*
! H&?5'* J0,(('015" 2,(;&11'/K
H3' 2)(*1 %&(&-(&%3 ,( 1=, *3,65/ ?' =()11'+ ,61 0,;%5'1'9 D';';?'( 1, 13)+I ,2 & %&%'( &* & 0,55'01),+ ,2 'C%'();'+9
5"7 8&" %&(1)065&( &11'+1),+ 1, 13' ,%'+)+- *'+1'+0'7 :/'&55"4 )1 1&5 ('*651*4 *6;;&().'/ &* 05'&(5" &+/ '0,+,;)0&55" &* %,**)?5'
*3,65/ *1&1' 0,+0)*'5" 13' ,?<'01)>' ,2 13' =,(I4 &+/ )+/)0&1' )+ 2)-6('*4 1&?5'*4 'B6&1),+*4 &+/ *03';'*7 H3' 1'C1 )+ 13'
=3" 13)* ,?<'01)>' )* );%,(1&+17 %&%'( *'(>'* <6*1 1, 'C%5&)+ 13' /&1&4 &+/ )* *'0,+/&("7 H3'
:+ -'+'(&54 13' :+1(,/601),+ *3,65/ 3&>' 13'*' '5';'+1*N ;,(' )+2,(;&1),+ 0&+ ?' 0,;%('**'/ )+1, 1&?5'*4 'B6&1),+*4
! H3' #DH"4+*>", ,2 13' =,(I7 '1074 13' *3,(1'( &+/ ;,(' ('&/&?5' 13' %&%'( =)55 ?'7
(0./ - .//, 012345678 69:;<) =>?8 @ 7#$ A=<'! 09BCD9B> 2334'**555)+,6-+3),7 !"#$ %&'()$ !""#! *+! "#$ %&! '()(*+ ,
,$ %$ -./'(0/"(0_0DB+9*BK9*` =:#(MX 0:B+BC) < H<M9:
!""#$
N' =#14/5,*#1, ! H3' =,(/ @13)*A ;6*1 &5=&"* ?' 2,55,='/ ?" & +,6+4 *,
13&1 )1* ('2'('+0' )* 'C%5)0)17
:+ 13' ,615)+'4 *6;;&().' 13' 0,+056*),+* ,2 13' %&%'( &* & R#+N
5)*1 ,2 *3,(1 %3(&*'* ,( *'+1'+0'*7 Q, +,1 ('%'&1 =3&1 )* )+ 13' H3)* )* & 2&*1 ('&01),+F H3)* 5'&/* 6* 1, 0,+056/'
D'*651* *'01),+4 6+5'** *%'0)&5 ';%3&*)* )* +''/'/7 H3' Z,+9 I5+N
056*),+* *'01),+ *3,65/ ?' <6*1 13&14 &+/ +,1 & *6;;&("7 :1 H3)* ('&01),+ )* 2&*1F H3)* ,?*'(>&1),+ 5'&/* 6* 1, 0,+056/'
*3,65/ &// & +'=4 3)-3'( 5'>'5 ,2 &+&5"*)*4 &+/ *3,65/ )+/)0&1' ! Q'*0()?' 'C%'();'+1&5 ('*651* 6+)2,(;5" )+ 13' %&*1 1'+*'7
'C%5)0)15" 13' *)-+)2)0&+0' ,2 13' =,(I7 R#+N
$//)1),+ ,2 =&1'( %*>", %(,/6017
O' PQ."$*6"1+0/ I5+N
$//)1),+ ,2 =&1'( %0>" %(,/6017
:+056/'4 )+ 13' 0,(('01 ,(/'( 1, 0,(('*%,+/ 1, 13' ,(/'( )+ ! ^*' 13' &01)>' >,)0' =3'+'>'( %,**)?5'7
13' D'*651* *'01),+4 &55 ,2 13' %&(&-(&%3 *6?3'&/)+-* ,2 13' R#+N
\C%'();'+1&5 *'01),+7 :1 =&* ,?*'(>'/ 13&1 13' *,561),+ 16(+'/ ('/7
I5+N
H3' *,561),+ 16(+'/ ('/7 #$
:5D5 E/ 6,FF1*G
O' ,?*'(>'/ 13&1 13' *,561),+ 16(+'/ ('/7
! Z,;%5'1' &55 0,;%&()*,+*7
! S1&(1 =()1)+- %,**)?5' ,615)+'* 2,( %&%'(* "0$/@ )+ & %(,<'017
R#+N
Q, +,1 =&)1 6+1)5 13' @'+/A7 H3' '+/ ;&" +'>'( 0,;'7
H3' ")'5/ =&* 3)-3'( 6*)+- ?(,;)+'7
! U(-&+).' 13' ,615)+' &+/ 13' %&%'( &(,6+/ '&*)5" &**);)9
I5+N
5&1'/ /&1&M1&?5'*4 'B6&1),+*4 2)-6('*4 *03';'*M(&13'(
H3' ")'5/ =&* 3)-3'( 6*)+- ?(,;)+' 13&+ 035,()+'7
13&+ &(,6+/ 1'C17
! H"%' &55 %&%'(* /,6?5'9*%&0'/ J+,1 *)+-5'9 ,( ,+'9&+/9&9
! U(-&+).' )+ ,(/'( ,2 );%,(1&+0'4 +,1 )+ 03(,+,5,-)0&5 ,(9
3&529*%&0'/K4 &+/ 5'&>' 1=, *%&0'* &21'( 0,5,+*4 &+/ &21'(
/'(7 $+ );%,(1&+1 /'1&)5 )+ =()1)+- %&%'(* 0,+0'(+* 13'
%'(),/* &1 13' '+/ ,2 *'+1'+0'*7 _'&>' -'+'(,6* ;&(-)+*7
=')-31 1, ?' -)>'+ 1, 1,%)0*7 Y',%3"1'* ,21'+ ,(-&+).' &
$**6;' 13&1 =' =)55 =()1' &55 %&%'(* 6*)+- 13' *1"5' ,2 13'
%&%'( )+ 1'(;* ,2 03(,+,5,-"N 13&1 )*4 13'" -)>' & ('0)1&1),+
$;'()0&+ Z3';)0&5 S,0)'1"7 E,6 0&+ -'1 & -,,/ )/'& ,2 13)*
,2 13')( 'C%'();'+1&5 %(,-(&;4 *1&(1)+- =)13 13')( 03'(9
*1"5' 2(,; 13('' *,6(0'*N
)*3'/ )+)1)&5 2&)56('* &+/ 5'&/)+- 6% 1, & 05);&01)0 *600'**9
! E)" H#5$10/,7 S);%5" 5,,I &1 &(1)05'* )+ 13' <,6(+&5* &+/
265 2)+&5'7 E)*, 0..$#04) *, 4#6./"+"/@ A$#1%7 K+0$+ A*+)
0,%" 13' ,(-&+).&1),+ ",6 *'' 13'('7
+)" 6#,+ *6.#$+01+ $",5/+,4 &+/ %61 13' *'0,+/&(" ('*651*
! S$">*#5, .0."$, 3$#6 +)" %$#5.7 !" 5,,I)+- &1 %('>),6*
5&1'(4 )2 &1 &557 H3' ('&/'( 6*6&55" /,'* +,1 0&(' 3,= ",6
%&%'(*4 ",6 0&+ *'' 'C&015" 3,= & %&%'( *3,65/ @5,,IA7 :2
&(()>'/ &1 ",6( ?)- ('*651*4 ,+5" =3&1 13'" &('7 S3,(1'(
=3&1 ",6 =(,1' 5,,I* /)22'('+14 )1 %(,?&?5" )* +,1 =3&1 ='
%&%'(* &(' '&*)'( 1, ('&/ 13&+ 5,+-'( ,+'*7
=&+17
! E)" F=K T01-D##J 3#$ F5+)#$,7 ^*'2654 /'1&)5'/4 '*%'9
cccccccccccccccccccccc
!"#$ %&'()$ !""#! *+! "#$ %&! '()(*+ , 2334'**555)+,6-+3),7 - .//, 012345678 69:;<) =>?8 @ 7#$ A=<'! 09BCD9B> (0..
pKa's of Inorganic and Oxo-Acids Chem 206
Substrate pKa H2O (DMSO) Substrate pKa H2O (DMSO) Substrate pKa H2O (DMSO) Substrate pKa H2O (DMSO)
INORGANIC ACIDS CARBOXYLIC ACIDS ALCOHOLS PROTONATED SPECIES
H2O 15.7 (32) O O
HOH 15.7 (31.2)
N+ -12.4
H3O+ -1.7 X OH MeOH 15.5 (27.9) Ph OH
X= CH3 4.76 (12.3) i-PrOH (29.3)
+
OH
H2S 7.00 16.5
CH2NO2 1.68 -7.8
t-BuOH 17.0 (29.4) Ph OH
HBr -9.00 (0.9) CH2F 2.66 +
c-hex3COH OH
HCl -8.0 (1.8) CH2Cl 2.86 24.0
-6.2
CH2Br 2.86 CF3CH2OH 12.5 (23.5) Ph CH3
HF 3.17 (15)
CH2I 3.12 (CF3)2CHOH 9.3 (18.2) H
HOCl 7.5 CHCl2 1.29 O+ -6.5
C6H5OH 9.95 (18.0) Ph Me
HClO4 -10 CCl3 0.65
CF3 -0.25 m-O2NC6H4OH 8.4 H
HCN 9.4 (12.9) O+ -3.8
H 3.77 p-O2NC6H4OH 7.1 (10.8) Me Me
HN3 4.72 (7.9) HO 3.6, 10.3 p-OMeC6H4OH 10.2 (19.1) O+ H -2.05
C6H5 4.2 (11.1)
HSCN 4.00 2-napthol (17.1) H
o-O2NC6H4 2.17 O+ -2.2
H2SO3 1.9, 7.21 m-O2NC6H4 2.45 OXIMES & HYDROXAMIC ACIDS Me
+
H
OH
p-O2NC6H4 3.44 OH
H2SO4 -3.0, 1.99 N S -1.8
o-ClC6H4 2.94 11.3 (20.1) Me Me
H3PO4 2.12, 7.21, Ph Ph
12.32 m-ClC6H4 3.83 O
N+ OH 0.79 (+1.63)
HNO3 -1.3 OH 8.88 (13.7)
p-ClC6H4 3.99 Ph N (NH)
O H Me
HNO2 3.29 o-(CH3)3N+C6H4 1.37
OH Me N OH (+5.55)
p-(CH3)3N+C6H4 3.43 Ph N (18.5)
H2CrO4 -0.98, 6.50 Me
p-OMeC6H4 4.47 Me
CH3SO3H -2.6 (1.6) SULFINIC & SULFONIC ACIDS
O
PEROXIDES
CF3SO3H -14 (0.3)
R OH O O
NH4Cl 9.24 S -2.6
R= H 4.25 MeOOH 11.5 Me OH
B(OH)3 9.23 trans-CO2H 3.02, 4.38 O
CH3CO3H 8.2
S 2.1
HOOH 11.6 cis-CO2H 1.92, 6.23 Ph OH
*Values <0 for H2O and DMSO, and values >14 for water and >35 for DMSO were extrapolated using various methods.
For a comprehensive compilation of Bordwell pKa data see: http://www.chem.wisc.edu/areas/reich/pkatable/index.htm
pKa Table.1 11/4/05 1:43 PM
D.H. Ripin, D.A. Evans pKa's of Nitrogen Acids Chem 206
Substrate pKa H2O (DMSO) Substrate pKa H2O (DMSO) Substrate pKa H2O (DMSO) Substrate pKa H2O (DMSO)
PROTONATED NITROGEN AMINES IMIDES HYDROXAMIC ACID & AMIDINES
HN3 4.7 (7.9) O O O
N+H4 9.2 (10.5) 8.88 (13.7)
NH3 38 (41) OH (NH)
EtN+H3 10.6 NH 8.30 NH (14.7) Ph N
i-Pr NH
2 (36 THF)) H
i-Pr2N+H2 11.05
TMS2NH 26(THF) (30) NSO2Ph
O O R= Me (17.3)
Et3N +H 10.75 (9.00) PhNH2 (30.6) Ac2NH (17.9) R NH2 Ph (15.0)
PhN+H3 4.6 (3.6) Ph2NH (25.0) Me
Me SULFONAMIDE
PhN+(Me)2H 5.20 (2.50) NCNH2 (16.9) HETEROCYCLES
NH (37) RSO2NH2 R = Me (17.5)
Ph2N+H2 0.78 NH (44) Ph (16.1) H (20.95) H
Me CF3 N (16.4)
6.3 (9.7) N
2-napthal-N+H3 4.16 Me
MeSO2NHPh (12.9)
H2NN+H3 8.12 H2N N (26.5) H N
GUANIDINIUM, N
(11.9)
HON+H3 5.96 HYRDAZONES,- IDES, & -INES N NH (23.0)
AMIDES & CARBAMATES
Quinuclidine N+ H 11.0 (9.80) N+H2 (13.6) NNH2 (21.6) N
O R= H (23.5) Me2N NMe2 Ph Me X= O (24) N
CH3 15.1 (25.5) X= S (13.3) HN
Morpholine O N+H2 8.36 O
(18.9) N X (18.6)
R NH2
Ph (23.3) H
Ph NHNH2 X
N-Me morpholine 7.38 CF3 (17.2)
NO2 PhSO2NHNH2 (17.2) X= O (14.8)
(urea) NH (26.9) NH
2
PhNHNHPh X= S (11.8) N
+ OEt (24.8) (26.1) N (13.9)
O2N NH3 -9.3 N
O O
PROTONATED HETEROCYCLES H X
Ph 12 (20.5) X= O (24.4)
NO2 Et N N H
(21.6) O NH N X= S (27.0)
H (12) (estimate) N N
N+ H DBU (19.8)
2.97, 8.82 + H
DABCO N+ (2.97, 8.93) O Bn N
O H S S
H
n= 1 (24.1) (20.8) DMAP H (29.4) H (16.5)
H3N+ NH +
+NH 6.90, 9.95 n= 2 (26.4) O NH + NH N N+
3
( )n Me2N NH 9.2 6.95 Me Me
+NH +NH HN
3 3 i-Pr
-9.0, 12.0 O R Me
O R= H (PPTS) 5.21 (3.4) NMe N
Proton Sponge (--, 7.50) (15) (24)
O + t-Bu 4.95 (0.90) H H
O NH NH
N (12.1) N + (18.4) N+
H Me 6.75 (4.46) Me
Me
PhCN+H -10 R Cl, H 0.72 i-Pr
*Values <0 for H2O and DMSO, and values >14 for water and >35 for DMSO were extrapolated using various methods.
For a comprehensive compilation of Bordwell pKa data see: http://www.chem.wisc.edu/areas/reich/pkatable/index.htm
pKa Table.2 11/4/05 1:43 PM
D.H. Ripin, D.A. Evans pKa's of CH bonds in Hydrocarbons and Carbonyl Compounds Chem 206
Substrate pKa H2O (DMSO) Substrate pKa H2O (DMSO) Substrate pKa H2O (DMSO) Substrate pKa H2O (DMSO)
O
HYDROCARBONS ESTERS KETONES
(Me)3CH O O Me
53 24.5 (30.3)
X
(Me)2CH2 51 t-BuO Me Me X
O (26.5)
X= H
CH2=CH2 Ph (23.6) Ph (19.8) X= H (24.7)
50
t-BuO (18.7) (25.7)
O SPh OMe
CH4 48 (56) NMe2 (27.5)
(20.0) COCH3 9 (13.3)
N+Me3 (23.8)
46 EtO SO2Ph (12.5) Br
O O O CN (22.0)
CH2=CHCH3 43 (44) 11 (14.2) 19-20 (27.1) O
EtO Me Et Et
O
PhH 43 O O (28.3) n
13 (15.7)
PhCH3 (43) i-Pr O i-Pr
41 MeO OMe
O (27.7)
Ph2CH2 33.5 (32.2) t-Bu O Me
n= 4 (25.1)
S (20.9) (25.8)
MeO (26.3) 5
Ph3CH 31.5 (30.6)
S Ph i-Pr 6 (26.4)
HCCH 24 O O 7 (27.7)
Ph
[30.2 (THF)] 8 (27.4)
PhCCH 23 (28.8) X
LiO Ph
XC6H4CH3 X= H (24.7)
AMIDES
CH3 (24.4) (28.1)
X= p-CN (30.8) O O
(26.6) Ph (17.7)
p-NO2 (20.4) Ph COCH3 (14.2)
Me2N
O COPh (13.3) (29.0)
p-COPh (26.9) (25.9) O
SPh CN (10.2)
Me Me Me2N
O F (21.6)
(26.1) (24.9) (22.85) O
N+Me3 OMe (25.5)
Me Me Et2N
O OPh (21.1)
SPh (16.9)
CN
20 (20.1) N (17.2) SePh (18.6)
NPh2 (20.3) O
O O (32.4)
15 (18.0) (18.2) N+Me3 (14.6)
Me2N Me NO2 (7.7) Me Me
S
H2 ~36 (25.7) SO2Ph (11.4)
Me2N Me
*Values <0 for H2O and DMSO, and values >14 for water and >35 for DMSO were extrapolated using various methods.
For a comprehensive compilation of Bordwell pKa data see: http://www.chem.wisc.edu/areas/reich/pkatable/index.htm
pKa Table.3 11/4/05 1:44 PM
D.H. Ripin, D.A. Evans pKa's of CH bonds at Nitrile, Heteroaromatic, and Sulfur Substituted Carbon Chem 206
Substrate pKa H2O (DMSO) Substrate pKa H2O (DMSO) Substrate pKa H2O (DMSO) Substrate pKa H2O (DMSO)
NITRILES SULFIDES SULFOXIDES SULFONES
O O O
NC X PhSCH2X
S X S X
X= Ph (30.8) Me Ph
X= H (31.3) CN (20.8) X= H (35.1) (29.0)
Ph (29.0) X= H
CH3 (32.5) COCH3 (18.7) SPh (29.0) CH3 (31.0)
Ph (21.9) COPh (16.9) O t-Bu (31.2)
NO2 (11.8) Ph (23.4)
COPh (10.2) S X
SPh (30.8) Ph CH=CH2 (22.5)
CONR2 (17.1) SO2Ph (20.5) X= H (33) CH=CHPh (20.2)
CO2Et (13.1) Ph (27.2) (22.1)
SO2CF3 (11.0) (18.2) CCH
(11.1) POPh2 (24.9) SOPh CCPh (17.8)
CN 11 O
(28.1) (24.5) COPh (11.4)
OPh MeSCH2SO2Ph (23.4) S (12.5)
Ph CHPh2 COMe
N+Me3 (20.6) PhSCHPh2 (26.7) OPh (27.9)
SPh (20.8)
(PhS)3CH (22.8) SULFONIUM N+Me3 (19.4)
CN (12.0)
SO2Ph (12.0)
(PrS)3CH (31.3) Me3S+=O (18.2) NO2 (7.1)
Me SMe (23.5)
Me (16.3) (20.5)
HETERO-AROMATICS S SPh
S+
(30.5) Ph CH2Ph SO2Ph (12.2)
S S PPh2 (20.2)
(28.2) H
Ph SULFIMIDES & SULFOXIMINES O O
N (PhS)2CHPh (23.0) S (22.3)
NTs Ph CHPh2
S
(30.1) X S O O
N Ph Ph R (31.1)
S
S R= Me (27.6) Me Me
N X= Ph (30.7) i-Pr (30.7) O O
(26.7) O NTs (18.8)
Ph CO2Me (20.8) S
S (24.5) CF3 Me
CN (19.1) Ph Me O O
RSCH2CN O NMe S (21.8)
Ph (24.3) (33) CF3 i-Pr
N+
(25.2) R= Me S
O O
Ph Me
Et (24.0) N+Me2 S (26.6)
O- O
(23.6) (14.4) CF3
i-Pr S
Ph (30.2) (22.9) Ph Me O O
O
t-Bu O NTs (32.8)
S
PhSCH=CHCH2SPh (26.3) S (20.7) Et Et
Ph (30.0) Ph CH2Cl
S BuSH 10-11 (17.0) (PhSO2)2CH2Me (14.3)
PhSH 7 (10.3)
*Values <0 for H2O and DMSO, and values >14 for water and >35 for DMSO were extrapolated using various methods.
pKa Table.4 11/4/05 1:44 PM
D. H. Ripin, D. A. Evans pKa's of CH bonds at Heteroatom Substituted Carbon & References Chem 206
Substrate pKa H2O (DMSO) Substrate pKa H2O (DMSO) Substrate pKa H2O (DMSO)
REFERENCES
ETHERS PHOSPHONIUM NITRO
DMSO:
P+H4 -14 RNO2
CH3OPh (49) JACS 97, 7007 (1975)
MeP+H3 2.7 R= CH3 10 (17.2) JACS 97, 7160 (1975)
MeOCH2SO2Ph (30.7)
Et3P+H 9.1 CH2Me (16.7) JACS 97, 442 (1975)
PhOCH2SO2Ph (27.9) JACS 105, 6188 (1983)
Ph3P+CH3 (22.4) CHMe2 (16.9) JOC 41, 1883 (1976)
PhOCH CN
2 (28.1) Ph3P+i-Pr (21.2) CH2Ph (12.2) JOC 41, 1885 (1976)
O JOC 41, 2786 (1976)
Ph3P+CH2COPh (6.2) CH2Bn (16.2)
MeO (22.85) JOC 41, 2508 (1976)
Ph Ph3P+CH2CN (7.0) CH2SPh (11.8) JOC 42, 1817 (1977)
CH2SO2Ph (7.1) JOC 42, 321 (1977)
CH2COPh (7.7) JOC 42, 326 (1977)
SELENIDES PHOSPONATES & JOC 43, 3113 (1978)
PHOSPHINE OXIDES O2N JOC 43, 3095 (1978)
O O JOC 43, 1764 (1978)
n JOC 45, 3325 (1980)
PhSe (18.6) (EtO)2P X
Ph JOC 45, 3305 (1980)
X= Ph (27.6) (26.9) JOC 45, 3884 (1980)
PhSeCHPh2 (27.5) n= 3 JOC 46, 4327 (1981)
CN (16.4)
(PhSe)2CH2 (31.3) 4 (17.8) JOC 46, 632 (1981)
CO2Et (18.6) JOC 47, 3224 (1982)
5 (16.0)
PhSeCH2Ph (31.0) Cl (26.2) JOC 47, 2504 (1982)
6 (17.9) Acc. Chem. Res. 21, 456 (1988)
PhSeCH=CHCH2SePh (27.2) SiMe3 (28.8) (15.8) Unpublished results of F. Bordwell
O 7
Ph2P X Water:
AMMONIUM IMINES
X= SPh (24.9) Advanced Org. Chem., 3rd Ed.
N Ph J. March (1985)
Me3N+CH2X CN (16.9)
(24.3) Unpublished results of W. P. Jencks
X= CN (20.6) Ph Ph
SO2Ph (19.4) PHOSPHINES Oxime ethers are ~ 10 pka units less THF:
(14.6) acidic than their ketone counterparts JACS 110, 5705 (1988)
COPh
Streitwieser, JOC 1991, 56, 1989
CO2Et (20.0) Ph2PCH2PPh2 (29.9) See cited website below for additional
data
CONEt2 (24.9) Ph2PCH2SO2Ph (20.2)
*Values <0 for H2O and DMSO, and values >14 for water and >35 for DMSO were extrapolated using various methods.
For a comprehensive compilation of Brodwell pKa data see: http://www.chem.wisc.edu/areas/reich/pkatable/index.htm
pKa Table.5 11/4/05 1:45 PM
DMSO Acidities of Common Heterocycles
Bordwell, ACR, 1988, 21, 456
Bordwell http://www.chem.wisc.edu/areas/reich/pkatable/index.htm
N N N N
N N N
N N N N N N
H H H H H H
23.0 19.8 18.6 16.4 13.9 11.9 18.0
O O O
O
O O O
N N N N N O N O
H H H H H H
24.0 20.8 15.0 12.1 26.4 24.0
Me
O S Me Me
S Me
S N N
H
H H H
N+
N S N Me N+ N+
H N N Me Me
H H Me Me
Me
13.3 14.8 11.8 29.4 16.5 18.4 24
Pka Table.6.cdx 11/4/05 1:45 PM