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Abstract: Loop-mediated isothermal amplification (LAMP) allows a rapid amplification of nucleic acids under isothermal
conditions. It can be combined with a rhodamine-based dual chemosensor for much more efficient, field-friendly
detection of Listeria monocytogenes. In this report, LAMP was performed at 63 ◦ C for 10 min, followed by a rapid reaction
of DNA amplification and the byproduct, pyrophosphate ion, with a rhodamine-based dual chemosensor and Cu2+ is
visualized as a disappearance of red color. The detection limit of L. monocytogenes by the LAMP-chemosensor was 8 to
10 cells per reaction tube, and the total assay time including 10 min for rapid DNA extraction was approximately 30 min.
Data on naturally contaminated raw milk samples indicated that the LAMP method was highly specific and sensitive, giving
100% concordance with the ISO 10560 reference method. The results showed that the LAMP-chemosensor method has
the advantages of better sensitivity and speed and less dependence on equipment than the standard Polymerase Chain
Reaction for specifically detecting low levels of L. monocytogenes DNA, and this can be useful in the field as a routine
diagnostic tool.
Keywords: Listeria monocytogenes, loop-mediated isothermal amplification (LAMP), rhodamine-based dual chemosensor
M: Food Microbiology
& Safety
Practical Application: The LAMP-chemosensor method reported here provided a powerful tool for detection of
L. monocytogenes in raw milk samples due to its specificity, sensitivity, and rapidity.
C 2011 Institute of Food Technologists
R
doi: 10.1111/j.1750-3841.2011.02383.x Vol. 76, Nr. 9, 2011 r Journal of Food Science M611
Further reproduction without permission is prohibited
Detection of Listeria monocytogenes . . .
Peter and others (2006), and live L. monocytogenes in the naturally Primer Sequence
contaminated raw milk samples was confirmed with PALCAM F3 5 -CTGGTTACACTAAATATGTATTTGC-3
Agar. B3 5 -GCCGTGGATGTTATCGTAT-3
FIP 5 -AGGTTTTGCTTGAGATTCAGAGATtttt
TAATCTCCCTTCCACGTACT-3
DNA extraction BIP 5 -TTGACTATGGTAGCGGAATTTCTCtttt
Ten-fold dilution of 25 mL artificially contaminated raw milk TTAACGCCATTGTCTTGC-3
was carried out in a sterile buffer (20 mM Tris–HCl, pH 8.0, LF 5 -GTAGTGCTAGCGTATTGTGCG-3
LB 5 -GGTATCTACGTTGGTAATGGTCAA-3
2 mM EDTA, pH 8.0, and 1.2% Triton X-100), and then the
DNA of the dilution series was extracted according to the pub-
lished method (Yano and others 2007), One milliliter of each Table 2–Bacterial strains used in this study and their sources.
diluted sample was centrifuged for 1 min at 10000 × g. The su- Strains Sources
pernatant was removed. The pellets were suspended in 200 μL
Listeria monocytogenes Offered by CMCCa
of buffer (20 mM Tris–HCl, pH 8.0, 2 mM EDTA, pH 8.0, and
CMCC54002
1.2% Triton X-100), and the tubes were incubated at 96 ◦ C for Listeria monocytogenes Offered by Heilongjiang Import and Export
15 to 30 min; after vortex mixing again, the tubes were subjected HJ-35 Inspection and Quarantine Bureau
to centrifugation at 10000 × g for 2 to 3 min, and the supernatant Salmonella sp CGMCC Offered by CGMCCb
was used for determining sensitivities of the LAMP method and 1.1552
Salmonella enterica Deposited in DICCc
PCR assay. At the same time, the precise number of CFU in ATCC13076
the dilution series was obtained by the plate count method using ETEC: 44247(6:15:16) Offered by CMCC
tryptone soy agar with 0.6% yeast extract. EPEC: 44706(111:58:-) Offered by CMCC
Pseudomonas fluorescence Offered by CGMCC
CGMCC 1.1802
Primer design Pseudomonas putida Offered by CGMCC
Based on the iap gene (GenBank Accession NC_003210) of CGMCC1.1819
L. monocytogenes EGD-e, 6 primers were designed using Primer- Staphylococcus aureus Offered by Heilongjiang Province Applied
Explorer 3 (Table 1). ATCC25923 Microbiology Research Institute
Staphylococcus aureus HJ-02 Offered by Heilongjiang Import and Export
Inspection and Quarantine Bureau
Specification of the LAMP method Shigella spp HJ-14 Offered by Heilongjiang Import and Export
Two strains of L. monocytogenes and 12 non-L. monocytogenes Inspection and Quarantine Bureau
Escherichia coli Offered by Heilongjiang Province Applied
strains were used for the specificity study (Table 2). L. monocy- ATCC25922 Microbiology Research Institute
togenes were cultured overnight at 37 ◦ C in tryptone soy broth Escherichia coli O157:H7 Offered by Heilongjiang Import and Export
with 0.6% yeast extract (Rossmanith and others 2006) and the Inspection and Quarantine Bureau
others in Luria-Bertani (LB) broth. DNA from these pure cul- Bacillus cereus KLDS71 Deposited in DICC
tures was extracted according to the manufacturer’s instructions a
b
CMCC: National Center for Medical Culture Collection Center.
CGMCC: China General Microbiological Culture Collection Center.
of a UNIQ10 Column DNA Extraction Kit (Shanghai Bioengi- c
DICC: Dairy Industry Culture Collection Center of Key Laboratory of Dairy Science,
neering Co., Ltd., Shanghai, China), and the DNA template was Ministry of Education of China.
ing (Yano and others 2007). And the PCR reaction was carried Sensitivity of the LAMP method and PCR assay
out according to the method described by Kwiatek and others Comparative analysis of sensitivity of L. monocytogenes detec-
(2003). tion by LAMP and PCR was carried out using a dilution series
of artificially contaminated raw milk. The detection limit of the
Sensitivity of electrophoresis and rhodamine-based dual LAMP assay was found to be 186 CFU/mL which corresponds
chemosensor to 8 to 10 cells per reaction tube, while the detection limit of
LAMP was carried out at 65 ◦ C for 10, 15, 20, 25, 30, 35, the PCR was 1.86 × 105 CFU/mL, it was indicated that LAMP
40, 45, and 50 min, respectively, and then terminated at 80 ◦ C was 103 -fold more sensitive than conventional PCR (Figure 3).
for 3 min. After LAMP products were analyzed by agarose gel The sensitivity of the LAMP assay was consistent with reports
electrophoresis, 5 μL red rhodamine-based dual chemosensor was concerning Salmonella spp, Escherichia coli, Flavobacterium columnare,
added to the residual amplified liquid. ammonia-oxidizing bacteria, and Escherichia coli O157 (Yano and
others 2007; Hara-Kudo and others. 2008; Okamura and others.
L. monocytogenes determination of naturally 2008; Wang and others 2008; Wang and others 2009), but the de-
contaminated raw milk tection limit of the PCR method was higher than that reported for
A total of 125 raw milk samples analyzed in the study were tested L. monocytogenes (Rossmanith and others 2006), which may be due
for L. monocytogenes contamination by the LAMP-chemosensor to the wide range of inhibitors in template DNA extracted from
method without enrichment and after being enriched in tryptone artificially contaminated raw milk (Kaneko and others 2007).
soy broth with 0.6% yeast extract for 6 h at 37 ◦ C, respectively,
and by the ISO 10560 International reference method (Kaclı́ková
Sensitivity of electrophoresis and rhodamine-based dual
and others 2003).
chemosensor
Results and Discussion As Fig. 4 indicates, the amplified products cannot be detected
by agarose gel electrophoresis when LAMP was performed for less
Absorption property of rhodamine-based dual than 25 min; however, they can be detected by rhodamine-based
chemosensor with pyrophosphate ion dual chemosensor via color change when LAMP was carried out
M: Food Microbiology
The absorption spectra of rhodamine-based dual chemosensor for 15 min, so the total assay time with rhodamine-based dual
(10 μM) with Cu2+ (10 μM) and various concentration of py- chemosensor including 10 min for rapid DNA extraction was
& Safety
rophosphate ion in methanol are shown in Figure 1, indicating approximately 30 min.
that the absorption increased with decreasing concentration of In LAMP, a large amount of DNA was synthesized, yielding a
pyrophosphate. The color of rhodamine-based dual chemosen- large amount of the pyrophosphate ion as a by-product. The reac-
sor changed from red to colorless on the addition of 1.0 μM tion of pyrophosphate ion with rhodamine-based dual chemosen-
pyrophosphate ion, a change which can be detected by the naked sor and Cu2+ results in the disappearance of the red colour, which
eye. The analytical detection limit for pyrophosphate ion by the enabled visual discrimination of results, and gives the rhodamine-
naked eye was as low as 1.0 μM. based dual chemosensor method advantages over agarose gel elec-
trophoresis (Wang and others 2010), turbidity (Seki and others
Specification of LAMP assay 2005), SYBR GREEBI (Bipin and others 2007), calcein (Tomita
As shown in Figure 2, the primers only amplified the sequences and others 2008), and lateral flow dipstick (Teeranart and others
from 2 stains of L. monocytogenes, but not from other bacterial 2010). Agarose gel electrophoresis has a carcinogenic hazard and
species and negative control. The sequencing results indicated that
the amplified products length of 2 stains of L. monocytogenes was
223 bp. The sequences were 100% concordance with iap gene of
L. monocytogenes EGD-e.
can be confused easily by cross contamination; determination of by the ISO 10560 method. However, when the raw milk samples
turbidity needs expensive instrumentation – Loopamp real-time were enriched for 6 h at 37 ◦ C, the number of positive samples
turbidimeter; SYBR GREEBI cannot discriminate between am- detected by the LAMP-chemosensor method was the same as that
plified DNA and primer dimers, which frequently resulted in a by the ISO 10560 method, as shown in Table 3.
false positive result (Daniel and others 2007); visual analysis with
calcein was performed under a fluorescent lamp, and the lateral
Table 3– L. monocytogenes determination of naturally contaminated
flow dipstick is based on both labeled primer and probe, which raw milk.
increases test cost and perplexed detection process.
LAMP- LAMP-
chemosensor chemosensor
L. monocytogenes detection of naturally contaminated without with
raw milk Number ISO10560a enrichment enrichment
of
A total of 125 raw milk samples were collected from Xiangfang samples Positive Negative Positive Negative Positive Negative
Farm of Northeast Agricultural University. Of 125 intact samples,
10 were tested by the LAMP-chemosensor method contained 125 12 113 10 115 12 113
a
L. monocytogenes, while 12 of the 125 samples were tested positive Raw milk sample testing by ISO10560 was performed in duplicate.
M: Food Microbiology
& Safety
Figure 3–Sensitivity comparison of LAMP and PCR for detection of L. monocytogenes CMCC54002 in raw milk. M, Marker 2000; N, negative control;
Lanes 1–8, LAMP carried out using the dilution series of artificially contaminated raw milk, 10−1 , 10−2 , 10−3 , 10−4 , 10−5 , 10−6 , 10−7 , 10−8 , respectively;
Lanes 9–16, PCR carried out using the dilution series of artificially contaminated raw milk, 10−1 , 10−2 , 10−3 , 10−4 , 10−5 , 10−6 , 10−7 , 10−8 , respectively.
All the products were electrophoresed on 2% agarose gels and stained with ethidium bromide.
Figure 4–Sensitivity of electrophoresis and rhodamine-based dual chemosensor. LAMP was carried out at 65 ◦ C for 10, 15, 20, 25, 30, 35, 40, 45, and
50 min, which corresponded to Lanes 1–9, respectively; the first tube was rhodamine-based dual chemosensor solution.
Conclusion Kwiatek K, Wojdat E, Rzezutka A, Rola J, Rózycki M. 2003. Comparison of PCR and other
methods in the detection of Listeria monocytogenes in milk inoculated experimentally with the
The results indicated that the LAMP-chemosensor method bacteria. Bull Vet Inst Puawy 47:357–62.
had the advantages of enhanced sensitivity and speed and less Nagamine, K., Kuzuhara, Y., Notomi, T. 2002. Isolation of singles tranded DNA from
loop-mediated isothermal amplification products. Biochem Biophys Res Commun 290:
dependence on equipment than the standard PCR method for 1195–8.
specifically detecting low levels of L. monocytogenes DNA, which Nagamine K, Hase T, Notomi T. 2002. Accelerated reaction by loop-mediated isothermal
amplification using loop primers. Mol Cell Probes 16:223–9.
should be helpful in basic research on food safety, medicine Notomi T, Okayama H, Masubuchi H, Yonekawa T, Watanabe K, Amino N, Hase T. 2000.
and pharmacy, environmental hygiene, point-of-care testing, Loop-mediated isothermal amplification of DNA. Nucleic Acid Res 28:e63.
Okamura M, Ohba Y, Kikuchi S, Suzuki A, Tachizaki H, Takehara K, Ikedo M, Ko-
and more. jima T, Nakamura M. 2008. Loop-mediated isothermal amplification for the rapid, sen-
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Acknowledgments Peter R, Martina K, Martin W, Ingeborg H. 2006. Detection of Listeria monocytogenes in food
using a combined enrichment/real-time PCR method targeting the prfA gene. Res Microbiol
This study was financially supported by Key Science and 157:763–71.
Technology Project of Henan Province (112102310370) and Sci- Rossmanith P, Krassnig M, Wagner M, Hein I. 2006. Detection of Listeria monocytogenes in
food using a combined enrichment/real-time PCR method targeting the prfA gene. Res in
entific Research Project of Xuchang Univ. (2011B026). Microbiol 157:763–71.
Seki M, Yamashita Y, Torigoe H, Tsuda H, Sato S, Maeno M. 2005. Loop-mediated isothermal
amplification method targeting the lytA gene for detection of Streptococcus pneumoniae. J Clin
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