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© 2001 Wiley-Liss, Inc.

Cytometry 44:106 –112 (2001)

Green Fluorescent Protein (GFP)-Dependent Separation


of Bacterial Ghosts From Intact Cells by FACS
W. Haidinger,1* M.P. Szostak,1,2 W. Beisker,3 and W. Lubitz1
1
Institute of Microbiology and Genetics, University of Vienna Biocenter, Vienna, Austria
2
BIRD-C GmbH & Co. KEG, Vienna, Austria
3
National Research Center of Environment and Health, Neuherberg, Germany
Received 13 June 2000; Revision Received 28 February 2001; Accepted 28 February 2001

Background: E. coli and Salmonella ghost preparations, tive or inactivated but nonlysed cells was highly fluores-
produced by applying the PhiX174 protein E-mediated cent at mean intensities 215-fold higher than ghosts,
lysis system, contain nonlysed bacteria at a very low per- which exhibited fluorescence at background level. Fluo-
centage. To use the ghosts as vaccines, additional methods rescent cells could effectively be separated from ghost
have to be identified to remove any viable cell, to end up preparations via flow cytometric sorting. Cell sorting sub-
in totally inactivated ghost fractions. sequent to protein E-mediated lysis reduced the number of
Materials and Methods: To increase the purity of ghost viable cells within ghost preparations by a factor of
fractions, we established a green fluorescent protein 3 ⫻ 105.
(GFP)-dependent “in vivo staining” method to be com- Conclusions: The presented procedure is compatible
bined with the E-mediated lysis system. Several gfp expres- with the protein E-mediated lysis system, is highly effec-
sion vectors were constructed, and the corresponding tive in separation of nonlysed fluorescent cells, and may
cellular fluorescence was analyzed. Bacterial fluorescence, serve as a prototype for ghost-purification in applications
exclusively preserved in nonlysed cells, was utilized to where only a minimum number of viable cells within
separate these cells from ghost preparations via flow cy- ghost preparations can be tolerated. Cytometry 44:
tometric sorting. 106 –112, 2001. © 2001 Wiley-Liss, Inc.
Results: High-level production of GFP prior to induction
of the lysis system did not affect bacterial growth rates and Key terms: green fluorescent protein; GFPS65T; FACS;
caused no inhibitory effects on the subsequent protein flow cytometry; ghosts; purification; candidate vaccine;
E-mediated lysis of the cells. The population of reproduc- PhiX174 gene E

Empty bacterial cell envelopes (ghosts) of a variety of within these ghost preparations have to be identified. The
Gram-negative bacteria are under investigation as candi- classical procedures for inactivation of bacteria, such as
date vaccines (1,2). Upon expression of the cloned phage heat, radiation, or chemical treatment, may cause reduc-
␾X174 lysis gene E, a transmembrane tunnel structure tion of immunogenicity through destruction of critical
through the bacterial cell envelope is formed (3,4). Driven epitopes. Therefore, these methods were excluded for
by high osmotic pressure inside the cell, the cytoplasmic further inactivation of the ghost preparation to preserve
content is expelled into the surrounding media, thus lead- the excellent immunogenic features of ghosts, which re-
ing to an empty bacterial cell envelope. Due to the gentle, sult from genetic inactivation by the protein E-mediated
nondenaturing production procedure, ghosts share func- lysis system. Methods to separate nonlysed cells from
tional and antigenic determinants of the envelope with ghosts, such as gradient centrifugation, were insufficient
their living counterparts. In animal experiments, ghosts
and resulted in ghost fractions of only slightly increased
were able to induce both cellular and humoral immune
purity and accompanied by a substantial loss of ghost
responses (5–7). Most vector-encoded gene E expression
material. Chemical indicators such as viability- or DNA-
systems are thermo-inducible by carrying the lethal gene E
under the control of the lambda promoters pL or pR (8). stains could be used to selectively stain either the popu-
Unlike Actinobacillus pleuropneumoniae (9) and lation of ghosts or the nonlysed cells and to separate them
Vibrio cholerae (10), where E-mediated lysis completely
accomplishes the inactivation of the pathogens, E. coli or
*Correspondence to: W. Haidinger, Institute of Microbiology and Ge-
Salmonella strains give ghost preparations, that still con- netics, University of Vienna, Biocenter, Dr. Bohrgasse 9, A-1030, Vienna,
tain small amounts of viable or nonlysed but inactivated Austria.
cells. Adequate methods to eliminate all viable bacteria E-mail: Haiding@gem.univie.ac.at
E. COLI GHOST VACCINE PURIFICATION 107
via flow cytometric sorting. However, as all these com- lin (200 ␮g/ml), kanamycin (50 ␮g/ml), or tetracycline (10
pounds have to be regarded as potentially harmful and ␮g/ml) where appropriate. For induction of lacPO, con-
therefore as nonacceptable by the regulatory authorities trolled gfp expression IPTG in final concentrations of 0.2 mM
to be used for vaccine preparations, alternative and appli- (solid media) or 5 mM (liquid media) was used. Bacteria
cable markers as criteria for flow cytometric sorting are were incubated at either 28°C or 37°C for expression of
desired. Here we describe the use of gfp expression vec- gfps65t and at 42°C for induction of lysis gene E. Growth and
tors for the FACS-assisted purification of ghost preparations. lysis of bacteria were monitored by measuring the optical
GFP, a highly fluorescent 27-kDa protein of 238 amino- density of liquid cultures at 600 nm (OD600). Bacteria or
acid residues, emits green light (␭max, 509 nm) when ghosts prepared for FACS analysis were collected by centrif-
illuminated with either ultraviolet (␭max, 395 nm) or blue ugation, washed twice with Tris-buffered-saline (TBS) (30),
light (␭max, 470 nm) (11,12). As a fluorescent marker and resuspended in TBS or 0.9% NaCl solution.
molecule, GFP has been used in a broad range of bacterial
cytometric applications. GFP has been applied as an ex- Materials
pression marker in genetic studies dealing with the iden- Restriction enzymes, other DNA-modifying enzymes,
tification and the characterization of potential promoter and buffers were obtained from either New England Bio-
sequences of various bacterial strains (13–16). The fea- labs (Schwalbach, Germany) or Roche (Vienna, Austria).
tures of these sequences in terms of their potential capa- Enzymes were used as specified by the supplier. Plasmid
bility to initiate the expression of gfp were determined via DNA and DNA fragments were prepared, analyzed, and
flow cytometry. Pathogenic bacterial cells could be inves- manipulated by standard procedures (30). For bacterial
tigated in interaction with their eukaryotic host cells, filtration, membrane filters with a pore size of 0.2 ␮m
using GFP as a bacterial marker for flow cytometric anal- (Millipore, Vienna, Austria) were used.
yses (17). Clones of fluorescent pathogenic bacteria in
association with their host cells could be isolated by flow Light Microscopy
cytometric sorting (18). To explore the safety of live For epifluorescence microscopy, the standard filter sets
vaccines candidates, GFP has been used to trace the bac- (fluorescein-isothiocyanate observation filter sets) of the
teria in the gastrointestinal tract of mice for microscopic research microscope Olympus AX70 were used.
and flow cytometric analyses (19). In environmental mon-
itoring experiments, gfp expression in specific bacteria FACS Analysis
has been used for the cytometric enumeration of their A FACStar Plus flow cytometer (Becton Dickinson, Hei-
total cell numbers (20). delberg, Germany), equipped with an argon-ion laser, was
In the present work, the cytoplasmic protein was used used to measure forward angle light scatter, right angle
for bacterial in vivo staining before induction of the pro- light scatter, and fluorescence of the cells. These param-
tein E-mediated lysis system. As lysing cells expel all their eters were acquired as pulse height signals (four decades
cytoplasmic content, including previously synthesized in logarithmic scale). The laser was tuned to 488 nm at a
GFP, only nonlysed bacteria should represent fluorescent power output of 500 mW, and the fluorescence emission
particles accessible to fluorescence-activated cell sorting of GFPS65T was measured using a 530-nm band-pass filter
(FACS), separating intact cells from ghosts. To optimize (BD 530 DF 30, Becton Dickinson). The recorded data files
fluorescence, several expression vectors encoding gfps65t were transferred by FACSNET software (Becton Dickin-
(21) were constructed, and the resulting fluorescence son) to an IBM-compatible PC system. For data analysis
activities were compared. As no living material should be and graphics, the Data Analysis System (DAS) software
present in a ghost candidate vaccine preparation, the package, version 4.38 (31), was used. For calibration of
model study of GFP-dependent flow cytometric sorting of the sorting module, standard FITC-labeled beads (2 ␮m;
bacteria and ghosts was used to evaluate the possibility of Becton Dickinson) were used. Flow cytometric sorting
ghost-vaccine purification. was performed by separating 300 fluorescent particles per
second from ghost preparations. Purified ghost fractions
MATERIALS AND METHODS were collected in 0.9% NaCl solution.
Plasmids and Bacterial Strains
Construction of gfps65t Expression Vectors
The plasmids pML1 (22), pAW12 (23), pcI857 (24), pSU1
(25), and pKSII(⫹) (Stratagene, Amsterdam, The Nether- Plasmid pRH431 (Fig. 1A), a pRSET B derivative, carries
lands) were described previously. pRH431, a pRSET B deriv- the gfps65t gene under transcriptional control of the T7
ative (26) encoding the gfps65t gene, was kindly provided by gene 10 promoter. Subcloning gfps65t into the BamHI
Karl Kuchler (Vienna Biocenter, Vienna, Austria). E. coli site of pRSET B resulted in a gene fusion encoding a
KT914 (27), carrying a chromosomal copy of T7 gene 1 polyhistidine leader peptide at the N-terminus followed by
under transcriptional control of the lacUV5 promoter, and E. the T7 gene 10 N-terminus, a tyrosine radioiodination site,
coli NM522 (28) have also been described. an enterokinase recognition site, and the gfps65t gene.
The gfp-specific ribosome binding site (rbs) has been re-
Growth Conditions placed by the rbs of the phage T7 gene 10. Transcription is
E. coli cells were routinely grown in LB broth (29), con- driven by the T7 promoter and efficiently terminated by the
taining 2% agar for solid media, supplemented with ampicil- T7 gene 10 terminator sequence (32,33). Digestion of
108 HAIDINGER ET AL.

FIG. 1. gfps65t expression vectors. A: The 1.2-kb fragment derived from pRH431 was inserted into several plasmids, thus placing gfps65t under
transcriptional control of different promoter/repressor systems. The fragment encoded T7 expression signals as well as gfps65t gene fusion, consisting of
a polyhistidine leader peptide (H6), the T7 gene 10 amino-terminus (g10), a tyrosine radioiodination site (Y), an enterokinase recognition site (EK), and
the gfps65t gene itself (GFPS65T). gfp expression is controlled by the T7 promoter on pRH431 (A), the lac promoter on pKSGFP (B), the ␭PL promoter
on pGFPPL (C) or the ␭PR/cI1857 system on pGFPPR (D), respectively. term, T7 gene 10 transcriptional termination sequences; rbs, translational initiation
signals of T7 gene 10; colE1, origin of replication; f1, f1 filamentous phage origin of replication; Amp, ampicillin resistance gene; Tet, tetracycline resistance
gene; T7, promoter region of T7 gene 10; lacPO, promoter-operator region of the lac-operon; ␭PL, ␭PR, ␭PRM, leftward, rightward, and rightward
“maintenance” promoters of bacteriophage lambda; cI857, gene, encoding the thermo-sensitive repressor for ␭PR/PL promoters.

pRH431 (3.65 kb) with XbaI and NaeI resulted in a 1.2-kb Construction of Plasmid pGFPPR
DNA-fragment, containing the complete gfps65t gene fusion Restriction of pAW12 with XbaI and HpaI, purification
placed in between the T7-derived rbs and terminator se- of the 4.8-kb DNA fragment, and ligation with the 1.2-kb
quences. This DNA-fragment was used for the construction pRH431 fragment led to pGFPPR (6 kb). The ␾X174 gene
of all expression vectors described in this work. E of pAW12, thereby, was replaced by the pRH431 frag-
Construction of Plasmid pKSGFP ment, placing gfps65t under transcriptional control of the
␭PR/cI857 elements (Fig. 1D)
Ligation of the 1.2-kb pRH431-fragment into the XbaI
and NaeI sites of pKSII(⫹) resulted in pKSGFP (3.85 kb),
placing gfps65t under lacPO control. (Fig. 1B). “In Vivo” Staining of Bacterial Cells, Preparation of
Ghosts, and Methods of Analyzing Liquid Fractions
Construction of Plasmid pGFPPL E. coli NM522 was cotransformed with pML1 and pKS-
Insertion of the 1.2-kb pRH431-fragment into the XbaI GFP and grown at 28°C in LB supplemented with ampi-
and NruI sites of pSU1 placed the gfps65t gene fusion cillin and kanamycin in the presence of 5 mM IPTG to
under control of the ␭PLpromoter of the resulting plasmid induce GFPS65T synthesis. For production of ghosts, the
pGFPPL (5.1 kb; Fig. 1C). culture was split and one part was shifted to 42°C to
E. COLI GHOST VACCINE PURIFICATION 109

FIG. 2. Flow cytometric analysis of


bacterial fluorescence derived from
different gfps65t expression plas-
mids. The E. coli strain NM522 was
transformed with the plasmids pKS-
GFP (lacPO control), pGFPPR (␭PR/
cI857 control), or pGFPPL (␭PL con-
trol; cotransformed with the plasmid
pcI857), while the E. coli strain
KT914 was transformed with the ex-
pression vector pRH431. The cellular
fluorescence is presented by mean in-
tensities (represented by bars) given
in arbitrary units (Green fluorescence
int. (a.u.) and the standard deviations
of fluorescence intensities (⵫E⵬). The
data sets for each combination of
plasmid/strain are derived from sin-
gle, individual flow cytometric runs
with regard to 10,000 analyzed bacte-
ria.

induce E-lysis, whereas the other part of the culture, culture at 37°C to trigger ␭PL/␭PR,-controlled gene expres-
grown at 28°C, was used as control. When no further sion. Transformants harboring pRH431 or pKSGFP were
decrease of OD600 of the lysis culture could be ob- grown at 28°C, and expression of gfps65t derived from
served, the cells were harvested by centrifugation (15 pKSGFP was induced with IPTG. Cells were harvested and
min, 10,000g; 4°C), washed twice with 30 ml TBS, their fluorescence intensity was quantified by flow cyto-
resuspended in 2 ml TBS, and stored at 4°C. Prior to metric analysis (Fig. 2).
flow cytometry, the samples were diluted 1:100 in TBS. Expression of gfps65t derived from pRH431 resulted in
FACS-purified ghost fractions were collected in 0.9% the highest intensity of fluorescence, with mean signals
NaCl solution. The number of colony-forming units 800-fold higher than background. PKSGFP- or pGFPPL-
(CFU) in nonpurified ghost preparations was deter- harboring cells were observed to be highly fluorescent at
mined by colony counting after growth on agar plates at mean intensities 215-fold and 170-fold higher, respec-
28°C for 48 h. The number of total cells in unsorted tively, than background. However, the pGFPPL-derived
fractions was determined using counting chambers. fluorescence appeared to be less homogeneous compared
Small numbers of viable cells in large volumes were to pKSGFP. With the gfps65t gene under transcriptional
quantified by means of vacuum extraction onto sterile control of the lambda pR promoter, very weak fluores-
membrane filters, which were put on nonselective LB- cence could be detected at mean values 52-fold higher
agar plates and incubated at 28°C. CFU values were than background. Moreover, gfps65t continuously ex-
ascertained after a growth period of 48 h. pressed at high levels in E. coli caused no cytotoxic effects
by means of growth stagnation or limitation of viability
(data not shown). However, though the growth rates
RESULTS were not affected, gfps65t expression apparently influ-
gfps65t Expression Vectors and Bacterial enced the cell shape of E. coli. After synthesis of GFPS65T,
Fluorescence E. coli cells became elongated, and a small percentage of
For optimal GFP production in E. coli, three gfps65t filamentous cells (⬍1%) could be detected. These mor-
expression vectors (pKSGFP, pGFPPL, and pGFPPR) were phological changes, however, caused no inhibitory effect
constructed, expressing the gfps65t gene under the con- on protein E-mediated lysis. Micrographs taken after lysis
trol of the lacPO-promoter, the ␭PL-promoter, and the showed two distinct populations: one consisted of com-
␭PR/cI857 system, respectively (Fig. 1). These vectors pletely lysed cells that were not detectable using epifluo-
were transformed into E. coli NM522. Plasmid pGFPPL rescence microscopy; the other population was com-
was cotransformed with pcI857, providing constitutive posed of cytoplasm-containing fluorescent bacteria (Fig.
expression of the cI857 gene in order to ensure the re- 3). The lac-promoter-controlled gfp expression system
pression of the ␭PLpromoter. The parental plasmid (pKSGFP) was considered most favorable, as this system is
pRH431, carrying the gfps65t gene under transcriptional independent of the presence of a host- or plasmid-en-
control of the T7 promoter, was transformed into E. coli coded T7 RNA polymerase and more generally applicable,
KT914, as this strain carries a chromosomal copy of T7 as the side effects of gfp expression mentioned above
gene 1 encoding the T7 RNA polymerase. Transformants were restricted to a minor fraction of the bacterial popu-
harboring either pGFPPL or pGFPPR were grown in liquid lation.
110 HAIDINGER ET AL.

FIG. 3. Corresponding micrographs


of E. coli NM522 (pML1, pKSGFP)
after lysis, taken under conditions of
phase contrast or fluorescence. Non-
lysed, cytoplasm-containing cells are
the only particles within ghost prep-
arations that exhibit fluorescence.

Protein E-Mediated Lysis in Combination With quantity of fluorescent cells within ghost preparations
Flow Cytometric Sorting was determined as 2.5%, indicating the presence of non-
For production of ghosts, E. coli NM522 (pKSGFP) was reproductive but nonlysed cells. By flow cytometric anal-
cotransformed with the lysis plasmid pML1 and grown at ysis, the nonlysed cells could be well-discriminated from
28°C in the presence of IPTG for continuous production ghosts, as the mean intensity of fluorescence was 215-fold
of GFP. After reaching mid-log phase, the cultures where higher for the former than for the latter population, which
shifted to 42°C to induce gene E expression and harvested exhibited fluorescence at background level, and only a
after the lysis process was completed. The ghosts, which few signals were detected bridging background to bright
appeared as translucent envelope structures as the result fluorescence (Fig. 4).
of loss of the cytoplasmic content, could clearly be dis- Four samples containing 107 bacterial particles were
criminated from the occasionally detectable nonlysed sorted, the ghost fractions were analyzed by microscopy,
cells containing cytoplasm. Epifluorescence microscopy and the numbers of total and viable cells were deter-
revealed that these nonlysed cells were highly fluorescent mined. The purification of ghost preparations was per-
in contrary to the population of ghosts, which were not formed at a separation rate of 300 fluorescent particles per
detectable under these conditions (Fig. 3). By comparing second. As bacterial cell envelopes were nonfluorescent,
the number of total cells with the number of colony- sorting gates were established to eliminate all particles
forming units (Table 1), the ratio of viable cells within with intensities of fluorescence higher than background,
ghost preparations was calculated as 1.3%, whereas the including nonlysed and partially lysed cells as well as

Table 1
Comparison Between Purity Grades of Ghost Preparations Before and Subsequent to
Flow Cytometric Sorting*

Total cells Fluorescent cells CFU Total cells:CFU


Lysis 1 ⫾ 0.35 ⫻ 107 2.5 ⫾ 0.27 ⫻ 10 5
1.3 ⫾ 0.17 ⫻ 105
8.5 ⫾ 2.8 ⫻ 101
Sort 8.4 ⫾ 2.8 ⫻ 106 3 ⫾ 1 ⫻ 100 3.1 ⫾ 1.2 ⫻ 101 3 ⫾ 1.1 ⫻ 105
*Numbers of total cells, fluorescent cells, numbers of colony-forming units (CFU), and
ratios of total cell number to number of viable bacteria (Total cells:CFU) were determined at
two different time points: immediately after the lysis process stopped (Lysis), and subsequent
to flow cytometric purification (Sort). Numbers are mean average values and standard
deviations derived from data of four ghost preparations. Total cells:CFU values were first
calculated for each ghost preparation separately and subsequently summarized through
statistical evaluation.
E. COLI GHOST VACCINE PURIFICATION 111
decreased numbers of viable bacteria. Some of the remain-
ing viable cells within sorted samples, however, might be
nonfluorescent and therefore FACS-undetectable, as only
up to two green fluorescent cells could be microscopi-
cally observed in half of the sorted ghost fractions, as
harvested by centrifugation (Table 1). However, previous
studies showed that elevated temperatures can cause GFP-
misfolding (34). In agreement with these studies, we ob-
served a dramatic decline of fluorescence in E. coli NM522
(pKSGFP) at growth temperatures higher than 28°C, lead-
ing to nearly complete loss of fluorescence in overnight
cultures incubated at 37°C. Hence we propose that non-
fluorescent but viable cells, that escaped the E-mediated
lysis process, first emerged after the temperature upshift
for lysis induction to 42°C. Support for this hypothesis
comes from cytometric analysis by the rare detection of
bacteria with decreased cellular fluorescence. This popu-
lation probably consists of bacteria containing various
portions of active and misfolded GFPS65T per cell. Mis-
folding of GFPS65T during synthesis at higher tempera-
tures (37°C) might also explain the weak fluorescence
observed with pGFPPL and pGFPPR, where the gfp ex-
FIG. 4. Flow cytometric analysis of a ghost preparation derived from E. pression systems are controlled by either the lambda pL or
coli NM522 (pML1, pKSGFP). Bacteria were detected by right-angle light pR promoter combined with the thermosensitive CI857
scatter (Side scatter) as well as green fluorescence. A distinct population
of highly fluorescent bacteria can clearly be discriminated from ghosts, repressor.
showing fluorescence at background level. Green fluorescence int. (a.u.), Although flow cytometry was able to purify ghosts from
intensity of green fluorescence per cell given in arbitrary units.
nonlysed cells in a single purification step by more than
three magnitudes, the presence of nonlysed cells in the
ghost preparation would remain a problem in vaccine
detectable cell aggregates. The sorting process was ac- preparations. As most of the remaining reproductive cells
companied by a recovery of ghosts, accounting for are nonfluorescent, a further purification of the ghost
roughly 80% in the purified fraction (Table 1). However, fraction by FACS could reduce the number of survivors
the sorting process did not remove all viable cells, leaving only insufficiently, and would also be accompanied by a
31 reproductive bacteria within sorted fractions consist- considerable loss of material and is a time-consuming
ing of 8.4 ⫻ 106 particles (mean values). The ratios of total process for sorting huge ghost/cell numbers. The method
cells:CFU in unsorted and purified fractions were calcu- could have an advantage where small numbers of ghosts
lated by comparing the number of total cells (including are needed and/or where a minor fraction of living cells
ghosts) to the number of viable bacteria, determined at can be tolerated in the ghost pool. Other methods for
two different time points, immediately after lysis and sub- removing fluorescent cells, e.g., photoinactivation of fluor-
sequent to flow cytometric sorting. The ratio of one living escent bacteria by destruction of the cells through high-
cell per 85 ghosts of the unsorted samples (after lysis) energy laser pulses (photodynamic “zapping”), also seem
could be reduced to one in 3 ⫻ 105 ghost after purifica- not to be suitable for improving the purity of the ghost
tion (Table 1). Thus the increase of purity, in terms of fraction considerably, because of the remaining problem
absence of viable cells, could be calculated as 3,500-fold. of nonfluorescent, nonlysed cells. However, as tempera-
In addition to the presented procedure, the method of ture-dependent misfolding of GFP might be crucial for the
flow cytometric sorting of bacteria which exhibit gene presented purification procedure, it sounds feasible to
expression detectable by fluorescence. reduce the number of nonfluorescent survivors in un-
sorted fractions by using thermostable variants of GFP
DISCUSSION (34). Proper folding of the protein at temperatures up to
The GFPS65T protein seems to be the appropriate 42°C could prevent a potential decrease in bacterial fluo-
marker molecule for flow cytometric sorting of cytoplasm- rescence during ghost production. A higher number of
containing bacteria because of its single excitation peak at nonlysed cells could therefore become detectable by
490 nm, which perfectly fits with the wavelength emitted FACS, because of the elevated amount of proper folded,
by the argon laser of FACS machines. active GFP per cell.
By comparing the results from sort-analyses with the In reversion of our task, the method of flow cytometric
microscopic examinations of the purified fractions, the sorting of bacteria which exhibit gene expression detect-
GFP-based sorting procedure can be characterized as able by fluorescence might be very useful to separate
highly efficient, since purification led to ghost fractions pools of cells with different intensities of fluorescence in
almost devoid of fluorescent particles and with strongly studies of mutation analyses of target genes or expression
112 HAIDINGER ET AL.

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