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Chromatin remodelling and the transcription cycle

Vikki M. Weake and Jerry L. Workman


Transcription by RNA polymerase II (Pol II) occurs in the context of nucleosomes from DNA facilitate the recruitment and assembly of
chromatin within a eukaryotic cell. Chromatin is generally inhibitory these complexes on the promoter and enable rapid gene activation.
to transcription, so a variety of mechanisms are required to activate Even during transcription elongation, nucleosomes must be removed
transcription from a nucleosomal template. One of the first steps is that for efficient passage of the polymerase. Furthermore, these same
large co-activator complexes interact with small activator proteins to nucleosomes must be reassembled rapidly and modified appropriately
GENETICS identify gene promoters that are ready to be transcribed. Nucleosome
remodelling complexes that use energy from ATP to move or displace
following passage of the polymerase to prevent inappropriate initiation
of transcription from promoter-like elements within the coding region.

'ZCORNGQHEJTQOCVKPTGIWNCVKQPFWTKPIGNQPICVKQP 'ZCORNGQHCEVKXCVQTFGRGPFGPVTGETWKVOGPV
Supplement to Nature Publishing Group

&WTKPIVTCPUETKRVKQPGNQPICVKQPVJG 6JGDKPFKPIQHRTQVGKP CEVKXCVQTU VQ


56'KP[GCUV RJQURJQT[NCVGFTGUKFWGUQPVJG%6& URGEKȮE&0#TGEQIPKVKQPUGSWGPEGU 2TQOQVGTUGNGEVKQP ICNCEVQUGIGPGKPFWEVKQPKP[GCUV
%6& RTQXKFGDKPFKPIUKVGUHQTEJTQOCVKP KFGPVKȮGUVCTIGVRTQOQVGTUCUUKVGU CPFTGEQIPKVKQP
4RF5 5GV s)CNCEVQUG %[VQRNCUO
OQFKȮGTUUWEJCU5'6&
5GVKP YJGTGVTCPUETKRVKQPYKNNQEEWT
%T[RVKE 7#5)#.
[GCUVCPFȯKGU YJKEJOGVJ[NCVGU
VTCPUETKRVKQP
*-'ȰEKGPVVTCPUETKRVKQP
TGSWKTGUEJTQOCVKPTGOQFGNNKPID[ #EVKXCVQT
EQORNGZGUUWEJCU59+50(CPF #EVKXCVQTUTGETWKVNCTIGOWNVK
)CN
%T[RVKE 45%CPFJKUVQPGEJCRGTQPGUUWEJ UWDWPKVEQCEVKXCVQTUUWEJCU )CN )CN )#.
VTCPUETKRVKQP 56' CUVJG(#%6EQORNGZCPF526 6CTIGVIGPG /GFKCVQTVJGJKUVQPG
CEGV[NVTCPUHGTCUGEQORNGZ5#)# )CNCEVQUG
UVCTVUKVG O40# 0WENGQUQOGUOWUVDGFKURNCEGF
#EGV[NCVKQP CJGCFQH2QN++CPFTGCUUGODNGF CPFEJTQOCVKPTGOQFGNNKPI
HQNNQYKPIKVURCUUCIG*KUVQPG 4GEQIPKVKQP )GPGVTCPUETKRVKQP EQORNGZGU
UWEJCU59+50(  #EVKXCVQTFGRGPFGPV 6JG)CNIGPGUKP[GCUVJCXG
OQFKȮECVKQPUCTGECTGHWNN[TGIWNCVGF UKVG UVCTVUKVG VJCVWUGVJGGPGTI[HTQO#62VQ 5#)#TGETWKVOGPV DGGPGZVGPUKXGN[UVWFKGFCPF
+P[GCUVNQUUQHVJGJKUVQPGFGCEGV[NCUGEQORNGZ4RF5QTVJG*- VQRTGXGPVKPCRRTQRTKCVG OQXGQTFKURNCEGPWENGQUQOGUCV CTGKNNWUVTCVKXGQHVJGTQNG
OGVJ[NVTCPUHGTCUG5GVTGUWNVUKPJ[RGTCEGV[NCVKQPQHVJGEQFKPITGIKQPQH VTCPUETKRVKQPKPKVKCVKQPHTQOYKVJKP 6GTOKPCVKQP VJGRTQOQVGT QHCEVKXCVQTUKPKPKVKCVKPI
IGPGUUWEJCU56'2TQOQVGTNKMGTGIKQPUYKVJKPVJGEQFKPITGIKQPCTG VJGEQFKPITGIKQPQHIGPGU CPFTGKPKVKCVKQP VTCPUETKRVKQP6JGRTGUGPEGQH
VJGPCDNGVQTGETWKV2QN++CPFEQORQPGPVUQHVJGIGPGTCNVTCPUETKRVKQP ICNCEVQUGTGNGCUGUVJGCEVKXCVQT
OCEJKPGT[CPFVTCPUETKRVKQPECPDGKPKVKCVGFKPCRRTQRTKCVGN[CVVJGUG 6TCPUETKRVKQP #EVKXCVQTFGRGPFGPV
TGETWKVOGPVQHEQCEVKXCVQTU )CNHTQOKVUTGRTGUUQT)CN
ET[RVKEKPKVKCVKQPUKVGU6JWURTQRGTTGIWNCVKQPQHJKUVQPGCUUGODN[ %6& GNQPICVKQP  YJKEJDGEQOGUUGSWGUVGTGFKP
FKUCUUGODN[CPFOQFKȮECVKQPUCTGETKVKECNVQEQPVTQNVTCPUETKRVKQPQPC VJGE[VQRNCUOD[)CN)CN
EJTQOCVKPVGORNCVG *KUVQPG 5'6& TGETWKVU5#)#HQNNQYGFD[
FGCEGV[NCUG /GFKCVQT #EGV[NCVKQP 5#)#
 /GFKCVQTCPFVJGEJTQOCVKP
TGOQFGNNGT59+50(*KUVQPG
CEGV[NCVKQPD[5#)#UVKOWNCVGU
'ZCORNGQHTGIWNCVKQPD[RQN[OGTCUGRCWUKPI #EVKXCVQTFGRGPFGPV VJGTGOQFGNNKPIQHRTQOQVGT
JGCVUJQEMIGPGUKP&TQUQRJKNCOGNCPQICUVGT /GFKCVQTCPF PWENGQUQOGUD[59+50(
QTCPIG
59+50(TGETWKVOGPV PWENGUQOGKPFKECVGUOQXGOGPV 
2TGJGCVUJQEM )GPG TGOQFGNNKPIGPJCPEGUVJG
O40# %JTQOCVKP
&5+(
JGVGTQFKOGT 2JQURJQT[NCVKQP 6JGVTCPUETKRVKQPE[ENG  5#)# VTCPUETKRVKQP MKPGVKEUQHCEVKXCVKQPCV)#.
TGOQFGNNGT 6JGEGPVTCNE[ENGUJQYUUQOGQH UVCTVUKVG
QH5RVCPF5RV  59+50( #VQVJGTIGPGUEJTQOCVKP
VJGOCKPUVGRUKPVTCPUETKRVKQP#V /GFKCVQT TGOQFGNNKPIOC[DGC
#EGV[NCVKQP
FKȭGTGPVIGPGUFKȭGTGPVUVCIGU|QH TGSWKTGOGPVHQTCEVKXCVKQP
*-VTKOGVJ[NCVKQP VJKUE[ENGECPDGVJGMG[TGIWNCVQT[ #V)#.5#)#CPF/GFKCVQT

TCVGFGVGTOKPKPI UVGRU/CP[ YQTMVQIGVJGTVQTGETWKV2QN++
52QP CURGEVUCTGEQPUGTXGFCOQPI CPFVJGIGPGTCNVTCPUETKRVKQP
)#( 0'.( %6& #UGEQPFUGTKGUQH URGEKGU
KPVJGEGPVTCNRCPGNUJWOCP HCEVQTUVQVJGRTQOQVGTYJGTG
5#)#
2TQOQVGTRTQZKOCN RJQURJQT[NCVKQPGXGPVU PQOGPENCVWTGKUOCKPN[WUGF 1PN[C VJGRTGKPKVKCVKQPEQORNGZ
RCWUGF2QN++ ECVCN[UGFD[%&- UGNGEVKQPQHRTQVGKPUCPFEJTQOCVKP 59+50(
HQTOU+PVJKUGZCORNG
2QUVJGCVUJQEM YKVJKP26'(DCTG OQFKȮECVKQPUCTGUJQYPVQ TGETWKVOGPVQH2QN++CPF
*5( TGSWKTGFVQTGNGCUG2QN++ KNNWUVTCVGVJGUGSWGPEGQHGXGPVU 2TGKPKVKCVKQP RTGKPKVKCVKQPEQORNGZHQTOCVKQP
HTQOVJKURCWUGFUVCVG 6JGUKFGRCPGNUUJQYGZCORNGU EQORNGZ CTGVJGTCVGNKOKVKPIUVGRUFWTKPI
2#42 KPVQRTQFWEVKXG QHRCTVKEWNCTIGPGUQTRTQXKFG  HQTOCVKQP 2TGKPKVKCVKQPEQORNGZHQTOCVKQP VTCPUETKRVKQPCEVKXCVKQP
VTCPUETKRVKQPGNQPICVKQP  OQTGFGVCKNHQTEGTVCKPUVCIGU
26'(DRJQURJQT[NCVGU 2QN++ 52
6QIGVJGTEJTQOCVKP
VJG52QHVJG%6&CU 4GNGCUGHTQO TGOQFGNNGTUCPF 6JGRTGKPKVKCVKQPEQORNGZRTKQTVQRTQOQVGTENGCTCPEG
52 YGNNCUTGUKFWGUQP0'.( 52 RTQOQVGT EQCEVKXCVQTUHCEKNKVCVG
CPF&5+( RTQZKOCN TGETWKVOGPVQH2QN++CPF
)#( 52 RCWUKPI 6(++&
VJGIGPGTCNVTCPUETKRVKQP
26'(D HCEVQTU
)6(U VQHQTO 2QN++
2QN++
4GNGCUGHTQORTQOQVGT VJGRTGKPKVKCVKQP 6(++'
26'(D
RTQZKOCNRCWUKPI   EQORNGZQPVJG
RTQOQVGT
UGGENQUGWR  &0# :2$
2TG 1TCPIGPWENGQUQOG 6$2
6TCPUETKRVKQP 2TQOQVGT KPKVKCVKQP KPFKECVGUOQXGOGPV %6& 52
GNQPICVKQP 2TQOQVGT ENGCTCPEG EQORNGZ QTFKURNCEGOGPV
2JQURJQT[NCVKQP
RTQZKOCNRCWUKPI 6(++* 6(++( 6(++$ %&-

%6& 2JQURJQT[NCVKQP
2TQOQVGT 52
*GCVUJQEMIGPGUKP&TQUQRJKNCOGNCPQICUVGTCTGTCVGNKOKVGFFWTKPIGCTN[ RTQZKOCN 2QN++
O40#
GNQPICVKQP2TKQTVQJGCVUJQEM)#(EQCEVKXCVQTUCPFVJG)6(UCTGDQWPF RCWUGF2QN++ 2QN++
#ȎGTVJGRTGKPKVKCVKQPEQORNGZJCUHQTOGF%&-YKVJKP6(++* 5GSWGPVKCNJKUVQPGOQFKȮECVKQPUQEEWTCVRTQOQVGTU
CV*URCPF2QN++KURTGUGPVCVVJGRTQOQVGTRTQZKOCNRCWUGUKVGYJGTGKV RJQURJQT[NCVGUVJGUGTKPGRQUKVKQP
52 YKVJKPVJGECTDQZ[VGTOKPCN *$WDKSWKV[NCVKQP
O40# FQOCKP
%6& QHVJGNCTIGUVUWDWPKVQH2QN++#TQWPFVJGUCOGVKOGVJG
UKVUKPCRQKUGFUVCVGTGCF[VQTGUWOGRTQFWEVKXGGNQPICVKQP*GCVUJQEM *-VTKOGVJ[NCVKQP *KUVQPG*N[UKPG
*- 
KPFWEGUVTKOGTK\CVKQPQHVJGVTCPUETKRVKQPHCEVQT*5(YJKEJVJGPDKPFU #VUQOGIGPGUCȎGT2QN++VTCPUETKDGUCUJQTVFKUVCPEGKPVQ &0#JGNKECUG:2$WPYKPFUsDCUGUQH&0#CVVJGRTQOQVGTVQ VTKOGVJ[NCVKQPKUCUUQEKCVGFYKVJ
&5+( 0'.(
VQVJGRTQOQVGTQH*UR$KPFKPIQH*5(KUTGSWKTGFDWVKUPQVUWȰEKGPVVQ VJGIGPGKVRCWUGUCVCTGIKQPQH&0#MPQYPCUVJG KPVTQFWEGCUKPINGUVTCPFGFVGORNCVGKPVQVJGCEVKXGUKVGQH2QN++
UGG CEVKXGVTCPUETKRVKQP+P[GCUV
RTQOQVGTRTQZKOCNRCWUGUKVG2QN++KURTGXGPVGFHTQO 2JQURJQT[NCVKQP $WT
TGETWKVVJGCEVKXCVKPIMKPCUG26'(DYJKEJRJQURJQT[NCVGUVJGKPJKDKVQT[ ENQUGWRCDQXG 6TCPUETKRVKQPDGIKPUCU2QN++FKUUQEKCVGUHTQOOCP[QH VJKUOCTMKUFGRQUKVGFD[5GV
HCEVQTU0'.(CPF&5+(CUYGNNCUUGTKPGQHVJG%6&TGUWNVKPIKPTGNGCUGQH OQXKPIHQTYCTFHTQOVJKUTGIKQPD[KPJKDKVQT[HCEVQTUUWEJ VJGIGPGTCNVTCPUETKRVKQPHCEVQTUENGCTUVJGRTQOQVGTCPFDGIKPUVQ 5GV
YKVJKP%1/2#55 CPFTGSWKTGU
2QN++KPVQRTQFWEVKXGVTCPUETKRVKQPGNQPICVKQP2#42ECVCN[UGUHQTOCVKQP CU0'.(CPF&5+(
0QVG0'.(KUPQVRTGUGPVKP[GCUV OCMG40#&WTKPIRTGKPKVKCVKQPEQORNGZHQTOCVKQPCPFRTQOQVGT RTKQTWDKSWKV[NCVKQPQHJKUVQPG
QH#&2TKDQUGRQN[OGTUCPFCNQPIYKVJ*5(CPF)#(KUTGSWKTGFHQT ENGCTCPEGUGXGTCNFKȭGTGPVJKUVQPGOQFKȮECVKQPUCTGFGRQUKVGFQP 2+% *$D[4CFCPF$TG(QT
PWENGQUQOGNQUUCV*URHQNNQYKPIJGCVUJQEM0WENGQUQOGNQUURTGEGGFU PWENGQUQOGUCVVJGRTQOQVGTKPENWFKPI*-VTKOGVJ[NCVKQPCPF*$ UKORNKEKV[VJGUGRTQVGKPUCTG
VJGRCUUCIGQH2QN++CPFHCEKNKVCVGUIGPGCEVKXCVKQP OQPQWDKSWKV[NCVKQP
UGGUKFGRCPGN  $TG 4CF PQVUJQYPKPQVJGTRCPGNU
%1/2#55 2#(EQORNGZ

Abcam — Chromatin antibodies you can rely on! • Chromatin remodelling • Transcription Quality and honesty are our top priorities. Our Abpromise offers References Abbreviations Acknowledgements
• Chromosome structure • DNA methylation 100% scientific and customer support of any product purchased from Fuda, N. J., Ardehali, M. B. & Lis, J. T. Defining mechanisms that regulate RNA CDK, cell division protein kinase; COMPASS, complex The authors are at the Stowers Institute for Medical
Abcam is a leading supplier of primary and secondary antibodies to
• RNA/DNA • Chromatin modifying enzymes Abcam or one of our authorized distributors. If our products do not polymerase II transcription in vivo. Nature 461, 186–192 (2009) | Weake, V. M. & proteins associated with Set1; DSIF, DRB sensitivity- Research, Kansas City, Missouri, USA. They thank members
researchers worldwide. We ship to over 100 countries from our offices Workman, J. L. Inducible gene expression: diverse regulatory mechanisms. Nature inducing factor; GAF, GAGA factor; HSF, heat shock factor; of the Workman laboratory for helpful comments and
We are rapidly developing and expanding our product range, perform as described on the datasheet, notify us within 6 months
in the United Kingdom, United States, Japan and Hong Kong, and offer Rev. Genet. 11, 426–437 (2010) | Kornberg, R. D. The molecular basis of eukaryotic Hsp70, heat shock protein 70; NELF, negative elongation suggestions during preparation of this poster.
customer service in English, Spanish, French, German and Japanese. looking for new targets and improving our existing antibodies. from date of purchase so we can help you or offer a replacement or
transcription. Proc. Natl Acad. Sci. USA 104, 12955–12961 (2007) | Orphanides, G. factor; PARP, poly(ADP)-ribose polymerase; P-TEFb,
To help us with this, we actively attend, support and help refund. Our web-based catalogue allows daily updates and far more & Reinberg, D. A unified theory of gene expression. Cell 108, 439–451 (2002) | positive transcription elongation factor b; SWI/SNF, Edited by Mary Muers; copyedited by Lewis Packwood;
Our catalogue of over 66,000 products includes antibodies, proteins, organize conferences on chromatin and nuclear signalling information than any printed catalogue including customer reviews, Ptashne, M. & Gann, A. Transcriptional activation by recruitment. Nature 386, switch/sucrose non-fermentable; TBP, TATA box binding designed by Patrick Morgan.
kits, lysates, slides and more. We have more than 26,000 products research. Find out more on our chromatin resource page: technical enquiries and links to publication references. Visit our 569–577 (1997) | Roeder, R. G. Transcriptional regulation and the role of diverse protein; TFII, transcription factor II; Tra1, transcription © 2011 Nature Publishing Group.
in the chromatin and nuclear signalling field, including: www.abcam.com/chromatin. website today and see for yourself: www.abcam.com. coactivators in animal cells. FEBS Lett. 579, 909–915 (2005) associated protein 1; UAS, upstream activating sequence http://www.nature.com/nrg/posters/remodelling

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