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Introduction
A century ago the composite word antigen referred to that which
generates antibodies. This tautology developed before the concept of a receptor, before the definition of macromolecular proteins, and before it was known that antibodies actually bind to antigens. The antigenantibody tautology remains central to our concepts of immunity and to the tautology of self and non-self .
At a molecular level, an antigen can be defined today as any molecule
recognized by (i.e., binding specifically to) the antigen-binding domain of an antigen receptor (antibody or T-cell receptor TCR).
its cognate antigen. The concept of a cognate antigen is useful when identifying the molecular rules governing antigenantigen receptor interactions, for predicting antigens from sequence and structural information, for designing subunit and genetic vaccines, and for understanding what the immunologist means by such terms as self and
nonself.
In this lecture we shall focus on the antigens regarding their processing
and presentation by specialized cells in order for the immune system to be activated or sensitized so that the body can counter the attack.
In order for us to elaborate antigen processing and presentation we
concepts
Endogenous Ags: antigens synthesized within cells, including self and non-self
protein----class MHC molecules.
Exogenous Ags: antigens comes from outside the cells, including self and non-self
protein----class MHC molecules.
Ag capturing----Endocytosis (internalization)
Phagocytosis, Pinocytosis, Receptor-mediated endocytosis
That does not evoke any problem if the cell acting is a B cell because a humoral immune
response will take place ; nonetheless when T cells are acting this will be a problem given that
most of them recognize peptide antigens which will elicit cell-mediated immune response.
T cells are specific for amino acid sequences of peptides while B cells recognize conformational
determinants of antigens, even proteins, in their native tertiary (folded) configuration. The
antigen receptors of T cells recognize very few residues even within a single peptide, and
different T cells can distinguish peptides that differ even at single amino acid residues.
Antigen Presenting Cells (APCs/accessory cell) are cells that display foreign antigen complexes
with major histocompatibility complex (MHC) on their surfaces. T-cells may recognize these complexes using their T-cell receptors (TCRs). These cells process antigens and present them to
T-cells.
T cells cannot recognise, and therefore react to, 'free' antigen. T cells can only 'see' antigen that
has been processed and presented by cells via an MHC molecule. Most cells in the body can present antigen to CD8+ T cells via MHC class I molecules and, thus, act as "APCs"; however,
the term is often limited to those specialized cells that can prime T cells (i.e., activate a T cell that
has not been exposed to antigen, naive T cell). These cells, in general, express MHC class II as well as MHC class I molecules, and can stimulate CD4+ ("helper") cells as well as CD8+ ("cytotoxic") T cells, respectively.
peptide antigens only when these peptides are bound to and displayed by the MHC molecules of that
naive CD4+ and CD8+ T cells, and therefore for initiating T cell responses. Macrophages present antigens to differentiated (effector) CD4+T cells in the effector
Macrophage
Press
Dendritic cells
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Fibroblast
A non-professional APC does not constitutively express
the Major Histocompatibility Complex class II (MHC class II) proteins required for interaction with naive T cells; these are expressed only upon stimulation of the non-professional APC by certain cytokines such as IFN-. Non-professional APCs include:
o Fibroblasts (skin) o Thymic epithelial cells o Thyroid epithelial cells o Glial cells (brain) o Pancreatic beta cells o Vascular endothelial cells
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Class I Class II
HLA molecules are responsible for the compatibility of the tissues of genetically different
Ig Domain
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2. chain
1: polymorphic sites 2: binding of CD4
3. Peptide
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First, antigen processing increases the complexity of pathogen antigens by exposing epitopes not available on the surface of pathogens. MHC molecules are merely the mechanism for presenting processed epitopes to T cells. MHC polymorphism further increases the size of the species antigenic universe.
endosomal proteases,
block class II-restricted but not class I-restricted antigen presentation,
whereas inhibitors of
ubiquitination or proteasomes selectively block class I-restricted antigen presentation.
co-stimulation from the APC is enforced by anchoring MHC molecules on the APC. This second mechanism thus minimizes autoimmunity. In this view, the experimental observations of genetic MHC restriction and
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Peptide binding by MHC class I and II molecules. Class I molecules are usually closed at both ends. The peptide termini must interact with terminal sockets. Peptides that are too long must be cleaved (arrows) prior to entry into the binding site. The clefts of class II molecules are open at the ends, permitting the binding of long peptides.
MHC restriction carries out two critical functions. First, by presenting processed peptides derived from within proteins and pathogens, MHC molecules sample a broader antigenic landscape than antibodies, whose epitopes are surface oriented. Second, nave T cells respond to cognate epitopes only when presented by an activated APC (B) but not when the APC is resting (A). Experimentally observed MHC restriction results when an activated APC cannot present the proper MHC/peptide pair (C).
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YYY Y Y Y Y Y
Proliferation and antibody production
B B B B BB B B
Y Y Y Y Y Y
T
No proliferation No cytokine release
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Soluble peptides of Ag
APC
No T cell response
No T cell response
No T cell response
Y
No T cell response
Cell surface peptides of Ag presented by cells that express MHC molecules Cell surface peptides of Ag
ANTIGEN PROCESSING
T cell response
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Provision of additional stimuli to the T cell beyond those initiated by recognition of peptide-MHC complexes by the T cell antigen receptor
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The site of pathogen replication or mechanism of antigen uptake determines the antigen processing pathway used
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1. Antigens Foreign proteins or self-proteins 2. are transported into the roughwithin the cytosol are broken down into fragments that are endoplasmic reticulum by TAP antigens by the action of(Transporter proteasomes which appears as a cylinder composed of a stacked array Associated with Antigen Presentation). Interestingly, of two inner and two outer rings, each ring being composed of seven subunits. Three of the the TAP1 and TAP2 genes are next to the genes seven subunits are the catalytic sites for proteolysis. A larger, 1500-kD proteasome is likely to be encoding LMP-2 and LMP-7 in the MHC, and the most important for generating class I-binding peptides and is composed of the 700-kD structure synthesis of the TAP protein is also stimulated by plus several additional subunits that regulate proteolytic activity. Two catalytic subunits present IFN-y. in many 1500-kD proteasomes, called LMP-2 and LMP-7, are encoded by genes in the MHC, 3. Antigens combine with MHC and are particularly important for generating class I-binding peptides. Cytokine IFN-y treatment class I molecules. 3 2 increases production of LMP-2 and LMP-7. MHC class I 4. The MHC class I/antigen Protein
complex is transported to the Golgi apparatus, packaged into a vesicle, and transported to the plasma membrane.
molecule 1 Protein fragments (antigens) Membrane Lumen 5 Rough endoplasmic reticulum Golgi apparatus
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Foreign antigen
Self-antigen 6 31
Antigen processing for MHC class I. Two chief pathways for antigen process intersect within the cytosol. Most endogenous antigens are synthesized on cytosolic ribosomes, processed by proteasomes, and enter the ER through the TAP (Transporter associated protein)transporter. A minor set of antigens are processed within the ER from proteins secreted into the ER. Professional antigen-presenting cells transfer endocytosed antigens into the cytosol for processing.
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The functions of class II MHC-associated invariant chains and HLA-OM. Class II molecules with
bound invariant chain, or CLIP, are transported into vesicles, where the CLIP is removed by the action of OM. Antigenic peptides generated in the vesicles are then able to bind to the class II molecules.
Another class II-like protein, called HLA-DO, may regulate the OM-catalyzed removal of CLIP. CIIV.
class II vesicle.
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2. The 3.The antigen vesicle is broken containing down the into processed fragments antigen to fuses with vesicles produced by the Golgi apparatus that 1. The unprocessed extracellular antigen is ingested form contain processed MHC antigens. classby IIInternalized molecules. A proteins class II-rich are subset of late endosomes that plays an important role in endocytosis and is within a vesicle. degraded antigen enzymatically presentation. inIn late macrophages endosomes and and human B cells, it is called the MHC class II compartment, or
lysosomes MIIC. to (In generate some mouse peptides B cells, that are a similar able to organelle containing class II molecules has been identified and bindnamed to the peptide-binding the class II vesicle.) clefts The of class MIIC IIhas MHC a characteristic multilamellar appearance by electron microscopy. containing
MHC class molecules. Importantly, The degradation it contains all of the protein components antigens required in for peptide-class II II association, including the enzymes molecules Vesicle
vesicles that is degrade an active protein process antigens, mediated the by class proteases II molecules, the Ii (or invariant chain-derived peptides), and a that molecule have acidic called pH optima. human leukocyte antigen DM (HLA-DM). Within the 2 MIIC, the Ii dissociates from class II MHC molecules by the combined action ofproteolytic enzymes and the HLA-DM molecule, and antigenic
Vesicle blocks access to the peptide-binding cleft of a class II MHC molecule, it must containing be removed before complexes processed 4. The MHC class II/antigen complex of peptide and class II molecules can form. The same proteolytic enzymes, such as cathepsin S, that generate antigen
peptides are then able to bind to the available peptide-binding clefts of the class II molecules. Because the Ii
is transported to the plasma Unprocessed peptides from internalized proteins also act on the Ii, degrading it and leaving only a 24-amino acid remnant membrane. 4
antigen
called class II-associated invariant chain peptide (CLIP).The processed antigen and the MHC class II
5. The displayed MHC class II/antigen molecule combine. complex can stimulate immune cells.
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Two pathways for loading antigens onto class II MHC molecules. Autophagy and endocytosis transfer cytosolic and external antigens, respectively, into the endosomes. Nascent class II molecules are chaperoned to the endosomes from the Golgi by the invariant chain. The DM molecules catalyze the exchange of antigenic peptides for invariant chain. Mature class II molecules recycling from the cell surface can acquire peptides in a DM-independent manner. Antigens binding initially as polypeptides are trimmed into oligopeptides in the endosomes and at the surface.
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B lymphocyte as APC
Unlike DC and macrophages, B cells are not phagocytic or macropinocytic, and do not express multiple types of antigen receptors. Their capacity to endocytose antigen is restricted almost exclusively to those captured through their cell surface receptor, the BCR. While this makes B cells less efficient than other APC at presenting most antigens, it also makes them the most focused. The BCR consists of an mIg, which provides the antigen recognition component to the receptor, noncovalently associated to an Ig:Ig heterodimer. This dimer provides the signaling module to the receptor, as it contains an immunoreceptor tyrosine-based activation (ITAM) motif required for signal transduction that upon antigen engagement
triggers internalization of the receptorantigen complex and initiates a signaling cascade leading to B-cell
activation. Ig-mediated endocytosis allows B cells to concentrate in their endosomal compartments minute amounts of antigen due to the high specificity of their mIg molecules. It is easy to imagine how this process operates on soluble antigens, but less so for antigens associated with cellular membranes. However, it has
recently been demonstrated that B cells can indeed endocytose antigens ripped from cell surfaces, so
BCR-mediated endocytosis can account for presentation of even cell-associated antigens without the need to invoke a phagocytic mechanism for antigen capture
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Like all lymphocytes, B-lymphocytes circulate back and forth between the blood and the lymphoid system of the body. B-lymphocytes are able to capture and present
peptide epitopes from exogenous antigens to effector T4lymphocytes. The MHC-II molecules bind peptide epitopes from exogenous antigens and place them on the surface of the B-lymphocytes. Here the MHC-II/peptide complexes can be recognized by complementary shaped T-cell receptors (TCRs) and CD4 molecules on an effector T4lymphocytes. This interaction eventually triggers the effector T4-
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B Lymphocyte
T Lymphocyte
B Lymphocyte
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The class I and class II pathways of antigen presentation sample available proteins for display to T cells. Most of these proteins are self proteins. Foreign proteins are relatively rare; these may be derived from infectious microbes, other foreign antigens that are introduced into the body, and tumors.
T cells survey all the displayed peptides for the presence of these rare foreign peptides and respond to the
foreign antigens.
Self peptides do not stimulate T cell responses, either because T cells with receptors for these peptides were deleted during their maturation in the thymus or the cells have been rendered inactive by recognition of the self antigen.
MHC molecules sample both the extracellular space and the cytosol of nucleated cells, and this is important because microbes may reside in both locations.
Even though peptides derived from foreign (e.g., microbial) antigens may not be abundant, these foreign antigens are recognized by the immune system because of the exquisite sensitivity of T cells.
In addition, infectious microbes stimulate the expression of costimulators on APCs that enhance T cell responses, thus ensuring that T cells will be activated when microbes are present.
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functions of T lymphocytes, which are largely mediated by interactions requiring direct cell-cell contact and by cytokines that act at short distances.
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generated by proteolysis in APCs and bind most avidly to MHC molecules. If an individual is immunized
with a multideterminant protein antigen, in many instances the majority of the responding T cells are
specific for one or a few linear amino acid sequences of the antigen. These are called the immunodominant epitopes or determinants. The proteases involved in antigen processing produce a variety of peptides from natural proteins, and only some of these peptides possess the characteristics that enable them to bind to the MHC molecules present in each individual.
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ability of that individual to respond to particular antigens. The phenomenon of genetically controlled immune responsiveness. We now know that the immune response (lr) genes that control antibody responses are the class II MHC structural genes. They influence immune responsiveness because various allelic class II MHC molecules differ in their ability to bind different antigenic peptides and therefore to stimulate specific helper T cells.
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lipid and glycolipid antigens by a numerically rare population of T cells called NK-T cells.
These lymphocytes have many unusual properties, including the expression of
markers that are characteristic of both T cells and NK cells, and the limited diversity of their antigen receptors. NK-T cells recognize lipids and glycolipids
displayed by the class I-like "non-classical" MHC molecule called CD I. There are
several CD1 proteins expressed in humans and mice.
Although their intracellular traffic pathways differ in subtle ways, all the CDI
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1.
Newly synthesized CD1 molecules pick up cellular lipids and carry these to the cell surface.
2.
3.
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T cell bacteria
TCR
CD1
internalization
Transportation to cell surface
CD1 re-expression
Degradation
phagocytosis
CD1
ENDOSOMES/MIC TGN
Glycosylation
CD1 HC ??
Golgi
ER
+
b2m calnexin
+
endogenous glycosylphosphatidyl inositol (GPI)
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T cells
A minor T cell population in the peripheral blood and lymphoid organs of human expresses an alternative TCR made up of and chains. The high number of gamma/delta-expressing T cells also found in the epithelial lining layer (skin and guts) suggests that they form a first line of defense against invading pathogens. It is thought that they may form part of the early innate immune response to pathogens. Unlike T cells, T-cell antigen receptors composed of polypeptide chains (TCRs) can directly recognize antigens in the form of intact proteins or non-peptide compounds. About 5% of peripheral blood T cells bear TCRs, most of which recognize non-peptide phosphorylated antigens.
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Unconventional T Cells
Some of these T cells do not follow the rule of MHC-peptide recognition.
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References:
- Abbas A., A. Lichtman & S. Pillai, Cellular and
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